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KP137437.1__AJA73292.1__1152AP2_07__00007

Bact-Vir

KP137437.1__AJA73292.1__1152AP2_07__00007

Identity

Accession:
KP137437 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mannheimia_phage_vB_MhS_1152AP2

TaxID: 1572747

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-62
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fnqA02 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.68 49.0 2.88e-01 75.4% 97.1%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.63 33.0 2.22e-01 82.0% 12.3%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 33.0 3.19e-01 80.3% 52.8%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.51 34.0 2.41e-01 85.2% 21.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3199044 5001.1.1.88 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › STE2 0.86 62.0 3.89e-01 75.4% 16.4%
3787064 7534.1.1.0 ↗ a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase 0.81 55.0 3.39e-01 70.5% 14.4%
4020403 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.76 55.0 3.27e-01 77.0% 10.8%
3731212 192.24.1.0 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.73 55.0 4.84e-01 98.4% 56.5%
3498627 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.68 58.0 3.80e-01 93.4% 27.8%
2417924 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.66 46.0 4.08e-01 90.2% 51.8%
4251053 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.66 56.0 3.67e-01 93.4% 28.2%
3717247 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.65 59.0 3.97e-01 100.0% 60.9%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 55.0 4.36e-01 100.0% 47.8%
3722860 2004.1.1.463 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd 0.65 54.0 3.22e-01 93.4% 67.8%
3990940 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.63 44.0 4.08e-01 72.1% 58.7%
4949048 223.1.1.171 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.62 37.0 2.89e-01 70.5% 25.7%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.61 42.0 3.57e-01 85.2% 44.0%
3775826 4016.1.1.0 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase 0.59 47.0 3.52e-01 90.2% 35.9%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.59 49.0 4.22e-01 90.2% 58.9%
3262092 3264.1.1.0 ↗ 0.59 53.0 3.79e-01 100.0% 59.4%
4942722 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.58 54.0 4.89e-01 100.0% 95.0%
3547409 604.1.1.153 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.58 53.0 3.62e-01 100.0% 30.5%
3444842 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.54 42.0 3.60e-01 90.2% 97.3%
3691304 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.53 43.0 2.81e-01 88.5% 29.8%
3311132 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 37.0 3.45e-01 78.7% 85.9%
4021531 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 38.0 3.34e-01 80.3% 74.5%
3611219 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 2.66e-01 100.0% 36.0%
D2 medium residues 65-131
PDB
Domain cluster: representative
D3 medium residues 132-204
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20356.3 best DUF6651 78.4 8.60e-22 100.0% 62.8%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.54 37.0 3.90e-01 95.9% 79.1%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.54 37.0 3.35e-01 71.2% 63.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944406 3939.1.1.14 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › DUF6651 0.93 89.0 6.65e-01 100.0% 49.0%
3781909 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 44.0 3.47e-01 75.3% 47.7%
3695273 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 45.0 3.42e-01 82.2% 44.3%
4886903 4167.1.1.2 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flg_bbr_C 0.57 27.0 2.39e-01 80.8% 28.2%
3996673 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 42.0 4.05e-01 87.7% 97.8%
3516652 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 37.0 3.87e-01 100.0% 84.6%
3746278 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.52 44.0 2.34e-01 95.9% 5.0%
3945533 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.52 43.0 3.03e-01 98.6% 96.6%
3649514 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.51 38.0 3.47e-01 80.8% 83.0%
3704006 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 38.0 3.06e-01 83.6% 38.1%
4528478 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.50 31.0 3.41e-01 98.6% 81.8%
5036721 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.43e-01 87.7% 95.0%
3846614 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.50 44.0 2.37e-01 100.0% 6.5%