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KP202158.1__AJD81875.1__YenMTG1_043__00043
Bact-VirKP202158.1__AJD81875.1__YenMTG1_043__00043
Identity
- Accession:
- KP202158 ↗
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Tegunavirus›
Yersinia_phage_vB_YenM_TG1
TaxID: 1589265
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-71
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 40.0 | 3.60e-01 | 71.1% | 50.0% |
| 3u31A02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.61 | 44.0 | 3.50e-01 | 77.8% | 50.5% |
| 2apoB00 | 2.20.28.40 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 | 0.60 | 44.0 | 4.11e-01 | 93.3% | 63.6% |
| 3m4xA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.59 | 40.0 | 3.31e-01 | 71.1% | 64.8% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.58 | 40.0 | 3.99e-01 | 73.3% | 93.6% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.56 | 45.0 | 3.10e-01 | 100.0% | 30.9% |
| 1dfxA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.54 | 40.0 | 3.11e-01 | 91.1% | 35.2% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.54 | 38.0 | 3.28e-01 | 73.3% | 69.7% |
| 1kbaA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 35.0 | 3.20e-01 | 71.1% | 100.0% |
| 4melA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 36.0 | 2.91e-01 | 71.1% | 80.9% |
| 3l2pA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 42.0 | 3.19e-01 | 97.8% | 35.0% |
| 2uuvB01 | 3.40.462.40 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix | 0.50 | 36.0 | 2.33e-01 | 82.2% | 46.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013997 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 48.0 | 4.84e-01 | 77.8% | 86.7% |
| 4938122 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.57 | 46.0 | 4.69e-01 | 97.8% | 93.3% |
| 4432935 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.56 | 44.0 | 4.11e-01 | 97.8% | 95.4% |
| 3819271 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.55 | 42.0 | 3.98e-01 | 97.8% | 90.8% |
| 4019034 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.55 | 45.0 | 4.69e-01 | 100.0% | 100.0% |
| None | — | 0.55 | 39.0 | 3.94e-01 | 73.3% | 82.2% | |
| 3924201 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.55 | 43.0 | 3.97e-01 | 97.8% | 67.2% |
| 4967717 | 375.1.1.181 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PALP | 0.54 | 38.0 | 4.15e-01 | 77.8% | 97.1% |
| 3733257 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.53 | 41.0 | 3.81e-01 | 97.8% | 93.8% |
| 3785476 | 375.1.1.57 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Vps36-NZF-N | 0.51 | 35.0 | 3.58e-01 | 71.1% | 97.8% |
| 4666101 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 37.0 | 3.80e-01 | 86.7% | 88.9% |
D2
medium
residues 131-193
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.54 | 39.0 | 4.41e-01 | 95.2% | 100.0% |
| 5owvD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 3.05e-01 | 95.2% | 79.7% |
| 5undA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 37.0 | 3.92e-01 | 95.2% | 88.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3885948 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 32.0 | 3.70e-01 | 87.3% | 60.0% |
| 3703452 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 41.0 | 3.72e-01 | 85.7% | 48.4% |
| 3414000 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 41.0 | 4.46e-01 | 95.2% | 88.0% |
| 3639540 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.59 | 49.0 | 3.34e-01 | 98.4% | 72.5% |
| 3685600 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 50.0 | 3.29e-01 | 100.0% | 67.0% |
| 3491054 | 7590.1.1.7 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI | 0.56 | 46.0 | 3.58e-01 | 98.4% | 81.2% |
| 3316151 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.56 | 46.0 | 3.14e-01 | 93.7% | 50.6% |
| 3483044 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 36.0 | 3.92e-01 | 73.0% | 84.0% |
| 4195872 | 556.1.1.0 ↗ | alpha arrays › KRAB domain (Kruppel-associated box, Pfam 01352) › KRAB domain (Kruppel-associated box, Pfam 01352) › KRAB domain (Kruppel-associated box, Pfam 01352) | 0.54 | 41.0 | 3.39e-01 | 96.8% | 44.3% |
| 3650874 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 46.0 | 3.53e-01 | 93.7% | 89.3% |
| 3627717 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 42.0 | 3.27e-01 | 92.1% | 64.4% |
| 3730254 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 39.0 | 2.97e-01 | 85.7% | 98.8% |