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KP202158.1AJD82042.1YenMTG1_232__00232

Bact-Vir

KP202158.1__AJD82042.1__YenMTG1_232__00232

Identity

Accession:: KP202158 ↗
Kingdom:: phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tegunavirus› Yersinia_phage_vB_YenM_TG1

TaxID: 1589265

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-123

PDB

Domain cluster: rep: MT778839.1__QNH71827.1__P9VFCI_165__00165__D6-122

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1hr5A00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.70	29.0	4.57e-01	71.9%	97.9%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	27.0	3.52e-01	71.1%	71.8%
4g1tA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.59	32.0	3.22e-01	86.8%	50.4%
3rkoG00	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.58	39.0	4.19e-01	100.0%	82.0%
3q1xA01	1.10.3130.10	Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1	0.57	36.0	3.51e-01	87.6%	55.4%
2hjmA01	1.20.120.460	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like	0.54	34.0	3.85e-01	100.0%	87.2%
8carA01	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.54	39.0	2.79e-01	75.2%	99.7%
2yfaA02	1.20.1440.210	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.54	33.0	3.45e-01	80.2%	64.7%
5mmiJ02	1.10.10.250	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain	0.53	26.0	3.23e-01	71.1%	78.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3592019	616.1.1.0 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain	0.67	32.0	4.04e-01	76.0%	73.3%
3281476	101.1.1.440 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DUF7639	0.58	26.0	3.13e-01	86.8%	60.0%
4994292	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.54	34.0	3.82e-01	76.9%	80.9%
5065206	3896.1.2.0 ↗	alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase	0.51	44.0	4.00e-01	97.5%	100.0%
4930773	4070.1.1.0 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like	0.50	35.0	3.12e-01	71.1%	99.4%

D2 high residues 218-284

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ghyA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.59	50.0	4.12e-01	95.5%	61.6%
3go2A01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.59	45.0	3.85e-01	100.0%	50.0%
2k85A00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.58	46.0	4.69e-01	97.0%	92.3%
3tl4X02	1.10.10.2420	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.58	50.0	4.93e-01	100.0%	91.7%
5xd7A01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.58	46.0	3.77e-01	100.0%	46.5%
5a48B00	3.30.420.610	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like	0.57	49.0	4.41e-01	100.0%	68.8%
3t8qB01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.55	46.0	3.87e-01	94.0%	63.5%
2aj4B03	1.20.1440.340	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.55	46.0	3.53e-01	95.5%	58.0%
2i0fA00	3.40.50.960	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase	0.54	42.0	3.31e-01	85.1%	87.1%
2vj4A01	1.10.10.2060	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.54	41.0	3.81e-01	100.0%	63.3%
3umgA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.54	37.0	3.71e-01	73.1%	85.9%
4kv7A01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.52	44.0	3.22e-01	100.0%	86.3%
1sjdB01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.52	43.0	3.53e-01	94.0%	51.9%
5yjlB01	3.30.460.30	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain	0.52	42.0	3.34e-01	95.5%	77.6%
4hhyC01	1.20.142.10	Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain	0.51	40.0	3.40e-01	94.0%	65.6%

ECOD (26)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4323920	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.71	56.0	5.75e-01	92.5%	89.2%
5021067	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.70	58.0	4.98e-01	91.0%	78.1%
3347816	101.1.2.394 ↗	alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1	0.70	57.0	4.82e-01	100.0%	53.9%
3422777	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.69	56.0	5.42e-01	92.5%	80.0%
3802403	2004.5.1.3 ↗	a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN	0.67	53.0	3.66e-01	97.0%	23.5%
3441807	101.1.2.386 ↗	alpha arrays › HTH › HTH › winged helix domain › WH_DRP	0.67	56.0	5.24e-01	94.0%	94.1%
1097261	3742.1.1.1 ↗	a+b two layers › hypothetical protein DESPIG_00776 › hypothetical protein DESPIG_00776 › hypothetical protein DESPIG_00776 › DUF4875	0.67	46.0	3.39e-01	73.1%	49.2%
3653189	101.1.2.10 ↗	alpha arrays › HTH › HTH › winged helix domain › Linker_histone	0.65	53.0	5.44e-01	97.0%	95.4%
3554971	101.1.2.10 ↗	alpha arrays › HTH › HTH › winged helix domain › Linker_histone	0.65	54.0	5.04e-01	94.0%	89.4%
3174958	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.64	48.0	5.12e-01	100.0%	100.0%
3357591	101.1.1.176 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DEK_C	0.63	52.0	5.03e-01	95.5%	82.7%
3199067	170.1.1.0 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C	0.62	43.0	3.92e-01	71.6%	62.9%
4121977	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.62	46.0	4.99e-01	100.0%	100.0%
3469087	101.1.2.386 ↗	alpha arrays › HTH › HTH › winged helix domain › WH_DRP	0.61	51.0	5.03e-01	100.0%	90.0%
4957636	247.1.1.1 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B	0.61	48.0	3.30e-01	92.5%	22.6%
3462112	101.1.2.10 ↗	alpha arrays › HTH › HTH › winged helix domain › Linker_histone	0.60	51.0	4.80e-01	100.0%	78.8%
3819682	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	50.0	4.91e-01	100.0%	92.0%
4947838	101.8.1.2 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2	0.60	48.0	3.30e-01	92.5%	30.8%
3683603	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.59	50.0	3.03e-01	98.5%	98.2%
3505604	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.59	50.0	4.88e-01	100.0%	89.3%
3613142	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.58	48.0	4.56e-01	98.5%	82.4%
3590138	2005.1.1.22 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH	0.58	44.0	3.04e-01	82.1%	72.9%
4109614	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.57	40.0	2.89e-01	76.1%	31.4%
4031513	129.1.1.0 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like	0.56	47.0	4.15e-01	100.0%	66.7%
3680859	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.55	43.0	4.28e-01	92.5%	84.3%
3563387	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.50	41.0	2.65e-01	98.5%	58.5%

D3 medium residues 140-196

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4p5nA00	2.30.30.1060	Mainly Beta › Roll › SH3 type barrels. ›	0.54	34.0	3.16e-01	93.0%	48.6%
8aa9A01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	35.0	2.82e-01	94.7%	34.2%
2z2mD01	3.90.1310.10	Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2)	0.52	38.0	3.79e-01	84.2%	76.3%
3emiA00	3.90.1780.10	Alpha Beta › Alpha-Beta Complex › Trimeric adhesin › Trimeric adhesin	0.51	41.0	3.46e-01	98.2%	70.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2833156	2003.2.1.3 ↗	a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin,NADH_dhqG_C	0.52	25.0	2.42e-01	80.7%	32.9%
4304846	4.1.1.7 ↗	beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24	0.51	41.0	3.44e-01	87.7%	100.0%