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KP202158.1__AJD82060.1__YenMTG1_250__00250
Bact-VirKP202158.1__AJD82060.1__YenMTG1_250__00250
Identity
- Accession:
- KP202158 ↗
- Kingdom:
- phage
Quality
66.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Tegunavirus›
Yersinia_phage_vB_YenM_TG1
TaxID: 1589265
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 387-447
Domain cluster:
rep: OQ362005.1__WCX68661.1__X__00036__D6-55
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o0wA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 52.0 | 3.55e-01 | 88.5% | 28.2% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.64 | 56.0 | 4.74e-01 | 100.0% | 100.0% |
| 4upiA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.64 | 56.0 | 3.29e-01 | 100.0% | 82.8% |
| 3cqzH00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 45.0 | 3.61e-01 | 73.8% | 87.1% |
| 8b55A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 56.0 | 4.01e-01 | 100.0% | 48.6% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.63 | 52.0 | 3.87e-01 | 90.2% | 45.3% |
| 3cxbA01 | 3.30.2440.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA | 0.62 | 51.0 | 4.12e-01 | 90.2% | 59.1% |
| 3ip3A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 50.0 | 3.50e-01 | 90.2% | 65.5% |
| 4k35A02 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.61 | 53.0 | 3.73e-01 | 100.0% | 98.0% |
| 1w5rA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.61 | 54.0 | 3.91e-01 | 100.0% | 64.2% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.61 | 52.0 | 3.80e-01 | 100.0% | 90.2% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.61 | 49.0 | 3.96e-01 | 88.5% | 99.2% |
| 5w3xD01 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.60 | 45.0 | 4.42e-01 | 80.3% | 78.5% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.59 | 43.0 | 3.39e-01 | 77.0% | 88.7% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.59 | 44.0 | 4.37e-01 | 80.3% | 76.2% |
| 3a46A01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.59 | 44.0 | 3.46e-01 | 82.0% | 77.2% |
| 2ecfA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.58 | 46.0 | 2.76e-01 | 86.9% | 28.2% |
| 4ipuA00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.58 | 45.0 | 3.56e-01 | 86.9% | 64.2% |
| 3qcwA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 51.0 | 3.60e-01 | 98.4% | 62.6% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.58 | 47.0 | 3.83e-01 | 90.2% | 80.3% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.58 | 47.0 | 3.91e-01 | 90.2% | 52.8% |
| 8hbfB02 | 3.30.450.260 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain | 0.58 | 45.0 | 3.61e-01 | 88.5% | 61.7% |
| 2vt8A00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.57 | 50.0 | 3.83e-01 | 100.0% | 46.2% |
| 1zo0A00 | 3.40.630.60 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.57 | 47.0 | 3.84e-01 | 96.7% | 96.8% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 47.0 | 4.08e-01 | 98.4% | 61.1% |
| 1y7bA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 43.0 | 2.72e-01 | 88.5% | 96.0% |
| 5hp6A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 42.0 | 2.71e-01 | 90.2% | 91.0% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 45.0 | 3.85e-01 | 98.4% | 58.7% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 44.0 | 2.91e-01 | 98.4% | 43.8% |
| 3iujA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.52 | 43.0 | 2.81e-01 | 100.0% | 66.4% |
| 2h0bC00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.20e-01 | 100.0% | 59.0% |
| 1y9wA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 41.0 | 3.53e-01 | 91.8% | 70.2% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 43.0 | 3.39e-01 | 98.4% | 63.5% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3227619 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.78 | 69.0 | 4.88e-01 | 100.0% | 48.1% |
| 4074315 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.76 | 69.0 | 4.90e-01 | 100.0% | 49.1% |
| 3516397 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.75 | 67.0 | 4.73e-01 | 100.0% | 44.3% |
| 4114928 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.74 | 66.0 | 4.68e-01 | 100.0% | 45.4% |
| 3216869 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.74 | 66.0 | 4.59e-01 | 100.0% | 41.5% |
| 4583636 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.74 | 66.0 | 4.66e-01 | 100.0% | 44.9% |
| 3889534 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.73 | 65.0 | 4.60e-01 | 100.0% | 41.6% |
| 4303165 | 5087.1.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 | 0.73 | 61.0 | 4.18e-01 | 91.8% | 60.0% |
| 3222321 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.72 | 51.0 | 3.40e-01 | 90.2% | 18.0% |
| 2048183 | 10.1.1.50 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Dit-like_CBM2 | 0.71 | 59.0 | 3.93e-01 | 90.2% | 26.1% |
| 3700781 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.71 | 52.0 | 4.01e-01 | 90.2% | 36.2% |
| 3978651 | 241.13.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif | 0.71 | 51.0 | 4.23e-01 | 86.9% | 43.8% |
| 185328 | 241.13.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif | 0.68 | 52.0 | 4.14e-01 | 90.2% | 42.6% |
| 1108115 | 11.28.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Secreted protein CofJ › Secreted protein CofJ › CofJ | 0.68 | 56.0 | 3.54e-01 | 90.2% | 65.2% |
| 4027339 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.68 | 52.0 | 3.96e-01 | 90.2% | 35.7% |
| 4961399 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.67 | 58.0 | 3.52e-01 | 100.0% | 78.9% |
| 3652840 | 708.1.1.9 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 | 0.65 | 50.0 | 4.45e-01 | 82.0% | 70.6% |
| 3643256 | 708.1.1.9 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 | 0.65 | 50.0 | 3.88e-01 | 82.0% | 48.0% |
| 5015593 | 3111.1.1.0 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain | 0.63 | 50.0 | 4.00e-01 | 86.9% | 46.7% |
| 3310516 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.62 | 50.0 | 3.47e-01 | 90.2% | 29.0% |
| 5030605 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.62 | 55.0 | 4.21e-01 | 100.0% | 62.9% |
| 4447649 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.62 | 54.0 | 3.65e-01 | 100.0% | 85.5% |
| 3999888 | 4018.1.1.0 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases | 0.61 | 51.0 | 4.06e-01 | 95.1% | 87.7% |
| 1110917 | 12.3.1.9 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 | 0.61 | 53.0 | 3.34e-01 | 100.0% | 67.4% |
| 3929294 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.61 | 47.0 | 3.83e-01 | 86.9% | 65.0% |
| 3214867 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.60 | 48.0 | 3.11e-01 | 90.2% | 18.6% |
| 4464751 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.59 | 50.0 | 3.65e-01 | 95.1% | 49.4% |
| 3194888 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.59 | 48.0 | 3.53e-01 | 88.5% | 53.1% |
| 3247097 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.59 | 46.0 | 3.81e-01 | 86.9% | 68.7% |
| 3628522 | 5.1.4.489 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Prenyltrans | 0.59 | 46.0 | 2.59e-01 | 86.9% | 37.7% |
| 3574500 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 46.0 | 2.76e-01 | 86.9% | 63.3% |
| 3226911 | 331.15.1.0 ↗ | a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 | 0.59 | 43.0 | 3.72e-01 | 77.0% | 52.0% |
| None | — | 0.58 | 43.0 | 3.83e-01 | 78.7% | 58.9% | |
| 3185911 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 42.0 | 2.55e-01 | 77.0% | 33.9% |
| 4571832 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.57 | 47.0 | 3.33e-01 | 93.4% | 39.5% |
| 3804152 | 5.1.4.173 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd | 0.57 | 51.0 | 3.15e-01 | 100.0% | 42.5% |
| 2870993 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.57 | 50.0 | 3.88e-01 | 100.0% | 84.3% |
| 3261814 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 41.0 | 2.61e-01 | 77.0% | 23.4% |
| 4018808 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.57 | 45.0 | 3.69e-01 | 88.5% | 100.0% |
| 3900377 | 220.1.1.41 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sharpin_PH | 0.57 | 43.0 | 3.47e-01 | 83.6% | 56.0% |
| 3203065 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.56 | 45.0 | 3.56e-01 | 90.2% | 99.3% |
| 4467065 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 41.0 | 2.75e-01 | 78.7% | 20.0% |
| 3967070 | 809.1.1.8 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF2845 | 0.56 | 41.0 | 3.92e-01 | 80.3% | 68.6% |
| 4988043 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.55 | 45.0 | 2.96e-01 | 100.0% | 52.9% |
| 3362984 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.54 | 46.0 | 3.36e-01 | 100.0% | 61.1% |
| 3629488 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 44.0 | 3.69e-01 | 95.1% | 57.4% |
| 3968938 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 39.0 | 3.88e-01 | 80.3% | 75.4% |
| 3648728 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.52 | 46.0 | 2.87e-01 | 98.4% | 42.4% |