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KP202971.1__AJD82904.1__PJWF_00010__00010

Bact-Vir

KP202971.1__AJD82904.1__PJWF_00010__00010

Identity

Accession:
KP202971 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-76
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.78 58.0 5.08e-01 100.0% 54.7%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.76 59.0 3.58e-01 100.0% 13.3%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.76 55.0 4.78e-01 100.0% 50.0%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.74 55.0 5.07e-01 100.0% 61.5%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.73 66.0 5.14e-01 100.0% 55.3%
3ttgA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.72 54.0 3.34e-01 100.0% 14.2%
3girA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.70 52.0 4.79e-01 100.0% 61.5%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.68 61.0 5.75e-01 100.0% 93.1%
2j5uA03 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.68 58.0 5.24e-01 100.0% 70.0%
1y9wA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 43.0 3.59e-01 100.0% 37.5%
2fpoC00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 42.0 2.97e-01 100.0% 21.0%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 54.0 4.80e-01 100.0% 62.4%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.66 59.0 5.38e-01 100.0% 90.9%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.65 55.0 4.79e-01 100.0% 61.5%
2esrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 41.0 3.03e-01 100.0% 23.7%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 47.0 4.00e-01 100.0% 45.2%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 55.0 4.37e-01 100.0% 48.7%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 46.0 3.59e-01 96.6% 35.8%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 48.0 4.40e-01 100.0% 64.6%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 3.83e-01 100.0% 56.4%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.60 43.0 4.05e-01 100.0% 61.3%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 46.0 4.12e-01 100.0% 58.6%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.59 46.0 3.15e-01 98.3% 23.2%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 51.0 3.77e-01 100.0% 57.8%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 4.24e-01 100.0% 66.7%
1owxA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 43.0 3.55e-01 100.0% 42.5%
3jb9a02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 38.0 3.81e-01 98.3% 65.1%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 38.0 3.01e-01 100.0% 31.5%
3p9dG03 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.56 45.0 3.54e-01 100.0% 99.4%
3beuA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.69e-01 100.0% 46.4%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.31e-01 100.0% 51.6%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.55 46.0 3.30e-01 100.0% 99.5%
2rt3A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 38.0 3.36e-01 100.0% 46.4%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 41.0 3.01e-01 86.4% 39.2%
2hxvA02 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.52 41.0 2.83e-01 100.0% 25.3%
5af7B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.51 44.0 3.60e-01 100.0% 57.9%
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.51 30.0 2.82e-01 71.2% 43.0%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 33.0 2.50e-01 76.3% 25.0%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.50 39.0 2.87e-01 86.4% 36.1%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.50 43.0 3.23e-01 100.0% 38.5%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966046 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.81 59.0 5.17e-01 100.0% 52.9%
3822839 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.79 57.0 5.04e-01 100.0% 52.9%
4988093 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.79 72.0 5.86e-01 100.0% 67.3%
2559744 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.78 64.0 6.48e-01 100.0% 88.1%
3597274 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.78 57.0 5.17e-01 100.0% 57.5%
5002644 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.78 72.0 6.60e-01 100.0% 96.0%
4567015 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.78 59.0 5.34e-01 100.0% 60.8%
3731068 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.75 57.0 4.61e-01 100.0% 43.6%
4178356 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.75 56.0 4.89e-01 100.0% 53.3%
4263415 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.74 54.0 4.72e-01 100.0% 51.1%
2736875 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.74 55.0 3.82e-01 100.0% 24.4%
4387060 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 54.0 3.69e-01 100.0% 21.9%
4889079 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.74 55.0 4.49e-01 100.0% 44.3%
4913414 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.74 55.0 4.49e-01 100.0% 44.3%
4623083 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.73 54.0 4.70e-01 100.0% 52.2%
364260 70.4.1.3 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.73 66.0 4.74e-01 100.0% 66.3%
3993911 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.73 56.0 5.00e-01 100.0% 58.8%
3163728 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.72 55.0 4.41e-01 100.0% 43.6%
1165612 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.72 54.0 4.95e-01 100.0% 62.3%
4889074 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.71 54.0 4.37e-01 100.0% 43.2%
4913409 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.71 54.0 4.42e-01 100.0% 44.9%
3950458 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 51.0 3.64e-01 100.0% 25.6%
3795488 1.1.8.18 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.70 53.0 4.76e-01 100.0% 57.6%
3719164 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 53.0 3.73e-01 100.0% 26.3%
3968188 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 50.0 3.87e-01 100.0% 35.6%
3579570 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.67 57.0 4.79e-01 100.0% 56.0%
3214011 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.66 55.0 4.40e-01 100.0% 47.0%
3239031 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.65 56.0 4.81e-01 100.0% 60.0%
4126278 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.65 57.0 3.79e-01 100.0% 24.7%
None 0.64 55.0 3.74e-01 100.0% 26.7%
3590667 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.64 54.0 3.64e-01 100.0% 25.0%
4959163 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.64 56.0 4.58e-01 98.3% 94.5%
5035997 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 44.0 4.28e-01 100.0% 65.7%
5005052 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 49.0 5.04e-01 100.0% 100.0%
3492991 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.61 53.0 4.14e-01 100.0% 44.0%
3399711 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 52.0 3.50e-01 100.0% 29.4%
3588729 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 49.0 4.21e-01 96.6% 56.8%
3008894 1.4.1.1 beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin › Baculo_p26 0.59 51.0 3.79e-01 100.0% 61.7%
4178967 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 47.0 4.37e-01 98.3% 69.3%
3279401 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.56 47.0 3.54e-01 100.0% 54.5%
3433101 3613.1.1.2 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › NOL9_C 0.54 45.0 3.83e-01 100.0% 69.1%
3610149 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 42.0 2.35e-01 88.1% 65.2%
5029710 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.62e-01 83.1% 30.9%
D2 high residues 78-131
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.79 70.0 5.79e-01 100.0% 60.0%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.77 69.0 5.71e-01 100.0% 63.4%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.75 68.0 5.14e-01 100.0% 54.5%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.63 54.0 4.89e-01 100.0% 89.6%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 33.0 3.49e-01 75.9% 66.7%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 48.0 4.59e-01 100.0% 93.5%
4fsdA02 3.40.5.100 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.51 36.0 3.19e-01 77.8% 76.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2559744 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.82 70.0 6.85e-01 100.0% 86.4%
5083817 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.81 72.0 6.77e-01 98.1% 98.5%
5002645 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.80 72.0 7.00e-01 100.0% 96.6%
5083816 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.79 71.0 6.48e-01 100.0% 91.4%
5002644 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.79 70.0 6.25e-01 100.0% 94.7%
2808420 70.4.1.1 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.78 68.0 5.43e-01 100.0% 52.3%
2640772 70.4.1.1 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.77 69.0 5.60e-01 100.0% 59.0%
364260 70.4.1.3 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.75 68.0 4.75e-01 100.0% 65.6%
3830763 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 44.0 3.80e-01 83.3% 43.8%
3227803 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.66 58.0 5.47e-01 100.0% 100.0%
4602455 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.66 56.0 5.16e-01 100.0% 95.9%
3728982 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.57 50.0 3.82e-01 100.0% 90.8%
4929005 3457.1.1.1 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.57 40.0 2.66e-01 74.1% 29.8%
3711282 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.64e-01 75.9% 96.4%
5016069 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.51 37.0 2.74e-01 90.7% 95.6%