←Back to structures
KP202971.1__AJD82967.1__PJWF_00074__00073
Bact-VirKP202971.1__AJD82967.1__PJWF_00074__00073
Identity
- Accession:
- KP202971 ↗
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-112
Domain cluster:
rep: NC_049471.1__YP_009884594.1__HYQ01_gp109__00109__D8-99
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.57 | 51.0 | 4.50e-01 | 100.0% | 68.5% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.56 | 33.0 | 3.76e-01 | 91.8% | 80.5% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.54 | 33.0 | 3.80e-01 | 91.8% | 88.0% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.54 | 34.0 | 3.86e-01 | 91.8% | 88.5% |
| 4hstB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.53 | 28.0 | 3.44e-01 | 70.0% | 82.4% |
| 1cp9B02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 29.0 | 3.45e-01 | 90.0% | 80.8% |
| 5e1qB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 36.0 | 2.78e-01 | 75.5% | 86.2% |
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.50 | 23.0 | 2.73e-01 | 70.0% | 60.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.57 | 50.0 | 4.93e-01 | 100.0% | 88.7% |
| 89916 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.57 | 51.0 | 4.51e-01 | 100.0% | 68.5% |
| 8233 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.57 | 51.0 | 4.50e-01 | 100.0% | 68.5% |
D2
high
residues 132-185
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 73.0 | 6.41e-01 | 100.0% | 95.1% |
| 1d3yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 71.0 | 6.43e-01 | 96.3% | 98.6% |
| 4y66F01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 68.0 | 6.35e-01 | 94.4% | 97.0% |
| 2dceA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 63.0 | 5.63e-01 | 94.4% | 68.4% |
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.74 | 65.0 | 5.30e-01 | 100.0% | 68.3% |
| 3lmmB05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 61.0 | 5.88e-01 | 92.6% | 95.1% |
| 2oauA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 46.0 | 3.72e-01 | 70.4% | 34.3% |
| 3d5lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 54.0 | 5.68e-01 | 88.9% | 100.0% |
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.71 | 62.0 | 5.68e-01 | 100.0% | 88.9% |
| 2pjpA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 58.0 | 5.61e-01 | 96.3% | 91.8% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.69 | 57.0 | 4.39e-01 | 98.1% | 41.3% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.67 | 56.0 | 4.28e-01 | 92.6% | 87.0% |
| 7lzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 54.0 | 4.60e-01 | 90.7% | 72.2% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 50.0 | 4.59e-01 | 94.4% | 60.8% |
| 3ljkA03 | 1.10.1390.10 | Mainly Alpha › Orthogonal Bundle › Phosphoglucose isomerase, C-terminal domain › | 0.66 | 38.0 | 4.36e-01 | 92.6% | 79.5% |
| 4jbeB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.62 | 50.0 | 3.23e-01 | 94.4% | 74.6% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.62 | 48.0 | 3.93e-01 | 83.3% | 53.1% |
| 3we0A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.61 | 49.0 | 3.90e-01 | 100.0% | 62.8% |
| 2vlaA03 | 1.10.10.2090 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 48.0 | 3.87e-01 | 94.4% | 78.3% |
| 1pzmA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 53.0 | 3.76e-01 | 100.0% | 34.1% |
| 2ganA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 41.0 | 2.96e-01 | 70.4% | 33.3% |
| 1oqyA03 | 1.10.10.540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › XPC-binding domain | 0.60 | 46.0 | 4.60e-01 | 90.7% | 98.3% |
| 8cdaC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.60 | 51.0 | 4.06e-01 | 100.0% | 65.0% |
| 4jzyA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 51.0 | 3.87e-01 | 100.0% | 56.5% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 44.0 | 3.76e-01 | 90.7% | 47.9% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 48.0 | 4.61e-01 | 94.4% | 93.5% |
| 2vklA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.58 | 49.0 | 4.37e-01 | 94.4% | 77.9% |
| 1v85A00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.57 | 45.0 | 3.90e-01 | 92.6% | 57.1% |
| 2vy1A00 | 1.10.4180.10 | Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY | 0.56 | 49.0 | 3.51e-01 | 100.0% | 73.0% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 45.0 | 3.25e-01 | 88.9% | 33.8% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 47.0 | 3.71e-01 | 100.0% | 49.1% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.53 | 47.0 | 2.93e-01 | 100.0% | 51.4% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 37.0 | 3.37e-01 | 75.9% | 59.5% |
| 2o6yA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.51 | 38.0 | 2.78e-01 | 92.6% | 81.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4249164 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 71.0 | 5.89e-01 | 94.4% | 60.0% |
| 4946400 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.78 | 70.0 | 5.29e-01 | 100.0% | 49.6% |
| 4988046 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 63.0 | 6.49e-01 | 87.0% | 96.0% |
| 3595962 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.77 | 63.0 | 4.36e-01 | 90.7% | 33.3% |
| 4638215 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.77 | 61.0 | 6.34e-01 | 85.2% | 100.0% |
| 4972832 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 65.0 | 6.03e-01 | 96.3% | 92.9% |
| 4972181 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 63.0 | 5.82e-01 | 94.4% | 91.4% |
| 5075915 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 68.0 | 5.81e-01 | 100.0% | 74.1% |
| 3612868 | 610.3.1.3 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 | 0.75 | 61.0 | 4.21e-01 | 90.7% | 33.3% |
| 1169399 | 101.35.1.2 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp | 0.75 | 63.0 | 6.39e-01 | 92.6% | 96.2% |
| 5000123 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.75 | 64.0 | 4.76e-01 | 96.3% | 81.5% |
| 4348496 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.74 | 64.0 | 5.60e-01 | 96.3% | 78.8% |
| 4979532 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 66.0 | 5.76e-01 | 100.0% | 78.8% |
| 3505603 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 60.0 | 5.28e-01 | 90.7% | 81.2% |
| 3275225 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 61.0 | 5.46e-01 | 92.6% | 73.3% |
| 4979555 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.72 | 61.0 | 5.91e-01 | 94.4% | 91.7% |
| 3475537 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.71 | 61.0 | 5.39e-01 | 98.1% | 82.5% |
| 5023135 | 101.1.2.97 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPA_C | 0.71 | 60.0 | 5.50e-01 | 100.0% | 81.3% |
| 4931635 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.70 | 60.0 | 5.23e-01 | 98.1% | 72.6% |
| 5018899 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 58.0 | 5.61e-01 | 100.0% | 98.4% |
| 4987535 | 101.1.4.18 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 | 0.69 | 57.0 | 4.35e-01 | 94.4% | 45.4% |
| 3897432 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.68 | 59.0 | 5.06e-01 | 100.0% | 67.8% |
| 3655744 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 57.0 | 4.72e-01 | 94.4% | 57.9% |
| 3966077 | 101.26.1.1 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N | 0.67 | 54.0 | 5.01e-01 | 92.6% | 80.0% |
| 4957698 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.66 | 55.0 | 4.20e-01 | 94.4% | 40.3% |
| 4191850 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.65 | 56.0 | 3.67e-01 | 100.0% | 22.9% |
| 3438244 | 3755.3.1.121 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Sin3_corepress | 0.64 | 54.0 | 4.17e-01 | 94.4% | 57.5% |
| 4404513 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.64 | 49.0 | 4.51e-01 | 88.9% | 62.7% |
| 3187353 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.63 | 41.0 | 3.97e-01 | 88.9% | 60.0% |
| 3284182 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.63 | 53.0 | 3.39e-01 | 100.0% | 18.6% |
| 4016725 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 54.0 | 4.53e-01 | 94.4% | 56.7% |
| 3988338 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.62 | 46.0 | 3.99e-01 | 81.5% | 70.0% |
| 3484228 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.62 | 50.0 | 5.05e-01 | 98.1% | 90.9% |
| 3997576 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.62 | 47.0 | 4.70e-01 | 88.9% | 100.0% |
| 3281319 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.61 | 51.0 | 3.62e-01 | 100.0% | 31.9% |
| 3474812 | 529.1.1.2 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP | 0.60 | 49.0 | 4.69e-01 | 92.6% | 76.9% |
| 3644507 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.60 | 44.0 | 4.41e-01 | 85.2% | 94.5% |
| 3214956 | 207.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4 | 0.60 | 52.0 | 3.35e-01 | 100.0% | 21.1% |
| 3302252 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.57 | 43.0 | 4.08e-01 | 81.5% | 69.2% |
| 4200552 | 539.1.1.1 ↗ | few secondary structure elements › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like › Crust_neurohorm | 0.56 | 42.0 | 4.05e-01 | 85.2% | 96.8% |
| 3844798 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.55 | 49.0 | 4.47e-01 | 98.1% | 94.3% |
| 3706420 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.55 | 44.0 | 3.18e-01 | 88.9% | 55.6% |
| 3300571 | 109.4.1.1137 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT10_TPR | 0.55 | 47.0 | 3.78e-01 | 100.0% | 56.4% |
| 3384014 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.53 | 42.0 | 3.56e-01 | 100.0% | 50.5% |
| 3365518 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 3.07e-01 | 100.0% | 28.1% |
| 5011354 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.53 | 43.0 | 3.07e-01 | 96.3% | 37.8% |