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KP211958.1__AJK27470.1__PTIM40_43__00043
Bact-VirKP211958.1__AJK27470.1__PTIM40_43__00043
Identity
- Accession:
- KP211958 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Libanvirus›
Cyanophage_P-TIM40
TaxID: 1589733
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 275-374
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.71 | 56.0 | 4.97e-01 | 91.0% | 59.7% |
| 6qnvA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.70 | 58.0 | 5.06e-01 | 100.0% | 59.5% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 31.0 | 3.87e-01 | 79.0% | 86.0% |
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 33.0 | 3.48e-01 | 87.0% | 62.1% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 28.0 | 3.31e-01 | 77.0% | 69.7% |
| 3licA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 32.0 | 3.39e-01 | 85.0% | 64.4% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.54 | 34.0 | 4.02e-01 | 89.0% | 94.1% |
| 4j3cA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.54 | 33.0 | 3.94e-01 | 79.0% | 95.3% |
| 1nxzA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.52 | 35.0 | 3.96e-01 | 90.0% | 94.4% |
| 3dclA02 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 37.0 | 3.91e-01 | 99.0% | 84.6% |
| 1ayaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 38.0 | 3.89e-01 | 88.0% | 82.2% |
| 2ci9B00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 38.0 | 3.83e-01 | 87.0% | 81.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2337056 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.82 | 70.0 | 4.93e-01 | 91.0% | 38.1% |
| 1563854 | 269.1.1.0 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like | 0.78 | 73.0 | 5.14e-01 | 100.0% | 39.1% |
| 3629862 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.75 | 59.0 | 4.39e-01 | 89.0% | 34.9% |
| 3415498 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.72 | 57.0 | 4.14e-01 | 93.0% | 31.9% |
| 3749653 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.72 | 59.0 | 4.52e-01 | 97.0% | 40.0% |
| 3526900 | 269.1.1.0 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like | 0.70 | 58.0 | 3.84e-01 | 96.0% | 22.2% |
| 3846780 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.69 | 59.0 | 4.44e-01 | 100.0% | 39.6% |
| 3476991 | 269.1.1.3 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI | 0.64 | 58.0 | 4.17e-01 | 97.0% | 91.7% |
| 3396269 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.63 | 43.0 | 3.46e-01 | 76.0% | 35.0% |
| 3477738 | 269.1.1.3 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI | 0.62 | 53.0 | 4.18e-01 | 97.0% | 46.5% |
| 3832176 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.62 | 34.0 | 3.89e-01 | 86.0% | 74.3% |
| 4596520 | 269.1.1.3 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI | 0.59 | 55.0 | 4.13e-01 | 100.0% | 91.3% |
| 3707634 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 29.0 | 3.77e-01 | 80.0% | 85.5% |
| 5012286 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.59 | 32.0 | 3.83e-01 | 77.0% | 85.0% |
| 4144719 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.58 | 32.0 | 3.56e-01 | 87.0% | 67.5% |
| 5036381 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.58 | 32.0 | 3.86e-01 | 78.0% | 86.7% |
| 3533770 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.57 | 30.0 | 2.98e-01 | 97.0% | 47.6% |
| 3718008 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 27.0 | 3.47e-01 | 73.0% | 84.0% |
| 4950522 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.57 | 30.0 | 3.76e-01 | 78.0% | 90.9% |
| 5050115 | 223.5.1.0 ↗ | a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like | 0.55 | 30.0 | 3.21e-01 | 83.0% | 58.8% |
| 3768834 | 214.1.1.3 ↗ | a+b two layers › SH2 › SH2 › SH2 › Cbl_N3 | 0.55 | 36.0 | 3.75e-01 | 85.0% | 71.6% |
| 3390155 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.55 | 32.0 | 3.48e-01 | 87.0% | 68.2% |
| 3727487 | 223.1.1.106 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7891 | 0.54 | 30.0 | 3.20e-01 | 84.0% | 58.9% |
| 3385912 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 31.0 | 3.05e-01 | 75.0% | 50.0% |
| 3917568 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.53 | 32.0 | 3.09e-01 | 91.0% | 52.2% |
| 3882636 | 214.1.1.11 ↗ | a+b two layers › SH2 › SH2 › SH2 › PF27628 | 0.52 | 35.0 | 3.27e-01 | 84.0% | 53.8% |
| 4180206 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 31.0 | 3.06e-01 | 87.0% | 54.3% |
| 3931682 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.52 | 38.0 | 3.70e-01 | 84.0% | 68.7% |
| 3503621 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 35.0 | 3.71e-01 | 86.0% | 80.0% |
| 4358637 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.51 | 34.0 | 3.96e-01 | 90.0% | 98.6% |
| 3391225 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.51 | 36.0 | 2.34e-01 | 76.0% | 79.5% |
| 3518949 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.50 | 36.0 | 3.48e-01 | 85.0% | 64.2% |
| 4031481 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.50 | 30.0 | 2.98e-01 | 74.0% | 54.5% |
D2
high
residues 427-528
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966307 | 837.1.1.0 ↗ | a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 | 0.53 | 38.0 | 4.19e-01 | 74.5% | 97.5% |
| 4112934 | 837.1.1.1 ↗ | a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal_S16 | 0.52 | 36.0 | 4.04e-01 | 72.5% | 96.0% |
D3
medium
residues 77-274
Domain cluster:
rep: KM199771.1__AIK68527.1__Lo5R7ANS_57__00057__D358-488_526-544
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21722.5 best | Gly_rich_2 | 40.8 | 3.70e-10 | 93.4% | 97.8% |