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KP211958.1__AJK27481.1__PTIM40_54__00054

Bact-Vir

KP211958.1__AJK27481.1__PTIM40_54__00054

Identity

Accession:
KP211958 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Libanvirus› Cyanophage_P-TIM40

TaxID: 1589733

Cluster

View cluster (250 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-25_68-78_115-209
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13640.13 best 2OG-FeII_Oxy_3 34.2 5.70e-08 70.6% 69.4%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.81 69.0 5.58e-01 88.9% 81.1%
2g19A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.80 73.0 5.93e-01 95.2% 91.2%
4nhxA02 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.79 65.0 5.17e-01 85.7% 80.4%
2rg4A01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.79 65.0 5.53e-01 85.7% 100.0%
3dkqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.79 65.0 5.65e-01 85.7% 96.2%
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.78 64.0 5.55e-01 85.7% 92.5%
3kt4A02 3.60.130.20 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain 0.77 64.0 4.67e-01 87.3% 77.8%
4xcbD00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.76 71.0 5.55e-01 100.0% 92.0%
6lnhB01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.75 63.0 5.17e-01 88.9% 94.1%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.68 58.0 4.84e-01 92.9% 85.9%
4c5wA02 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.65 53.0 3.99e-01 86.5% 77.7%
1s4cC00 2.60.120.370 Mainly Beta › Sandwich › Jelly Rolls › YhcH/YjgK/YiaL 0.64 52.0 4.95e-01 86.5% 99.3%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 41.0 4.33e-01 75.4% 79.5%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.59 42.0 4.48e-01 76.2% 83.8%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.59 42.0 4.44e-01 73.8% 80.9%
3kq4B04 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 40.0 4.28e-01 73.0% 83.8%
3m1hD00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 41.0 3.71e-01 75.4% 79.0%
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 41.0 3.73e-01 73.8% 75.0%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.56 36.0 3.95e-01 75.4% 80.4%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.56 41.0 3.62e-01 77.8% 90.5%
2w1sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 3.82e-01 72.2% 91.4%
2qjvA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 51.0 4.84e-01 100.0% 94.7%
3j4uH00 2.60.120.1110 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 3.78e-01 73.0% 82.1%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 38.0 3.70e-01 72.2% 87.3%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 38.0 3.75e-01 73.0% 82.2%
1kxgA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.65e-01 72.2% 94.4%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.53 39.0 4.04e-01 76.2% 82.9%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 3.99e-01 75.4% 94.0%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 3.55e-01 73.8% 78.8%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.53 38.0 3.16e-01 75.4% 84.1%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 3.67e-01 78.6% 80.8%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 33.0 3.66e-01 73.8% 80.0%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 3.70e-01 75.4% 76.6%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 36.0 3.54e-01 71.4% 82.6%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.90e-01 87.3% 79.3%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.52 38.0 3.71e-01 77.0% 92.9%
3v98B01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 37.0 3.86e-01 89.7% 81.2%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3626991 10.12.1.44 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.81 67.0 5.20e-01 87.3% 82.3%
3887707 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.81 69.0 5.20e-01 89.7% 76.6%
3414751 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.81 74.0 5.72e-01 96.8% 82.4%
3234489 10.12.1.44 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.79 66.0 5.35e-01 88.1% 82.7%
4454771 10.12.1.43 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-Fe_Oxy_2 0.78 64.0 5.10e-01 84.9% 93.9%
3927787 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.77 73.0 5.43e-01 100.0% 77.5%
3510594 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.77 72.0 5.77e-01 100.0% 85.5%
1411392 10.12.1.44 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.76 63.0 4.67e-01 87.3% 79.3%
3967555 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.76 67.0 5.51e-01 92.1% 88.6%
5038285 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.75 62.0 5.42e-01 86.5% 87.8%
3787155 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.74 61.0 4.97e-01 86.5% 87.1%
3592362 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.71 67.0 4.87e-01 100.0% 86.0%
3337506 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.60 44.0 3.96e-01 76.2% 89.1%
4627110 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.60 42.0 4.43e-01 72.2% 100.0%
4352479 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.60 42.0 4.50e-01 73.0% 95.5%
3233834 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.60 42.0 4.33e-01 72.2% 80.0%
5027316 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 43.0 4.01e-01 73.8% 79.4%
3341432 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.59 42.0 4.06e-01 73.8% 81.4%
2995239 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 42.0 4.33e-01 73.0% 78.8%
3794468 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 43.0 4.55e-01 76.2% 86.4%
3243972 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.59 43.0 4.35e-01 75.4% 84.0%
3791166 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 45.0 4.58e-01 81.7% 99.2%
3236999 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 41.0 4.42e-01 72.2% 87.6%
4337308 10.37.1.0 ↗ beta sandwiches › jelly-roll › TerD › TerD 0.58 42.0 3.79e-01 73.0% 99.4%
3928274 10.4.1.27 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF29839 0.58 41.0 4.56e-01 80.2% 94.0%
3489033 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 42.0 4.07e-01 76.2% 69.0%
4510460 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 41.0 4.28e-01 74.6% 80.0%
3924594 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 40.0 4.47e-01 70.6% 100.0%
4382620 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 40.0 4.54e-01 72.2% 98.9%
3597620 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 47.0 4.46e-01 88.1% 97.3%
3642389 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 41.0 4.39e-01 73.0% 96.2%
4385484 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 41.0 3.90e-01 73.0% 74.5%
1681795 10.32.1.53 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GalBD_like 0.57 42.0 3.61e-01 77.0% 71.5%
3486965 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 47.0 4.50e-01 89.7% 94.0%
1948618 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 44.0 4.66e-01 85.7% 94.4%
3400204 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.57 41.0 4.09e-01 73.8% 71.5%
4302120 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 40.0 4.27e-01 71.4% 96.2%
4627078 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 40.0 4.30e-01 72.2% 98.1%
3480786 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 43.0 3.95e-01 78.6% 64.4%
3573728 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.57 40.0 4.13e-01 73.0% 79.2%
3413879 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 41.0 4.49e-01 76.2% 94.3%
3479775 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 39.0 4.36e-01 71.4% 93.7%
3795887 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.56 44.0 3.49e-01 82.5% 60.0%
3788140 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.56 41.0 3.93e-01 75.4% 72.4%
3609787 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.56 39.0 3.83e-01 70.6% 75.6%
3825274 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.56 42.0 3.83e-01 77.8% 63.0%
5082908 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 39.0 4.22e-01 73.0% 93.5%
3619202 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.56 34.0 4.00e-01 82.5% 89.4%
5083101 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 40.0 4.14e-01 75.4% 91.7%
4033011 10.32.1.170 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sec-ASP3 0.55 39.0 3.76e-01 71.4% 83.6%
4325812 11.1.5.85 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.55 41.0 3.34e-01 78.6% 79.6%
5039240 10.1.2.191 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM60 0.55 38.0 3.83e-01 71.4% 86.2%
3929950 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 39.0 3.53e-01 73.0% 91.2%
3433491 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 39.0 4.10e-01 73.0% 87.3%
3933402 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 40.0 4.14e-01 76.2% 86.1%
3713297 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 41.0 4.40e-01 78.6% 95.2%
3686437 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 42.0 4.49e-01 81.0% 99.0%
5039644 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 37.0 3.90e-01 70.6% 93.9%
5033249 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 37.0 3.73e-01 70.6% 82.3%
1121 10.32.1.35 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › YpM 0.53 39.0 4.04e-01 76.2% 82.9%
3371040 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.53 44.0 3.96e-01 88.1% 77.6%
3270665 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.52 38.0 3.88e-01 76.2% 92.0%
5041351 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 38.0 3.88e-01 75.4% 84.2%
4929726 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 38.0 4.11e-01 76.2% 94.3%
4025604 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.52 40.0 4.20e-01 81.0% 100.0%
5070101 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 37.0 3.77e-01 73.0% 77.5%
3586331 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.51 38.0 3.08e-01 78.6% 94.0%
3562329 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.50 37.0 3.16e-01 76.2% 89.8%