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KP211958.1__AJK27486.1__PTIM40_59__00059
Bact-VirKP211958.1__AJK27486.1__PTIM40_59__00059
Identity
- Accession:
- KP211958 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Libanvirus›
Cyanophage_P-TIM40
TaxID: 1589733
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-87
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 49.0 | 5.20e-01 | 89.7% | 83.5% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.66 | 45.0 | 4.82e-01 | 71.3% | 85.9% |
| 2yufA00 | 1.20.120.2010 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NAB conserved domain 2 | 0.64 | 43.0 | 3.69e-01 | 70.1% | 88.7% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.64 | 47.0 | 4.07e-01 | 89.7% | 49.6% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 32.0 | 3.72e-01 | 71.3% | 75.0% |
| 2fx0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 34.0 | 2.96e-01 | 87.4% | 37.9% |
| 2kxeA00 | 1.10.8.800 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › D-family DNA polymerase, DP1 subunit N-terminal domain | 0.54 | 29.0 | 3.12e-01 | 80.5% | 58.3% |
| 1ab8A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 44.0 | 3.58e-01 | 90.8% | 91.0% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.54 | 38.0 | 3.04e-01 | 75.9% | 96.9% |
| 4xomB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 43.0 | 3.32e-01 | 89.7% | 70.7% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 43.0 | 3.47e-01 | 86.2% | 92.4% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 38.0 | 3.33e-01 | 75.9% | 97.7% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 34.0 | 3.72e-01 | 88.5% | 81.7% |
| 3bg2A01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 43.0 | 3.41e-01 | 93.1% | 51.9% |
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.51 | 37.0 | 3.71e-01 | 79.3% | 73.1% |
| 1lb3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 42.0 | 3.42e-01 | 90.8% | 77.2% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.50 | 40.0 | 3.56e-01 | 97.7% | 60.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029754 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 44.0 | 4.49e-01 | 89.7% | 77.6% |
| 4510378 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.60 | 50.0 | 3.65e-01 | 92.0% | 84.9% |
| 3719979 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.60 | 46.0 | 4.34e-01 | 81.6% | 71.4% |
| 4520905 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.59 | 49.0 | 3.53e-01 | 94.3% | 69.6% |
| 3533107 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.57 | 45.0 | 4.30e-01 | 83.9% | 94.0% |
| 4876177 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 43.0 | 4.51e-01 | 80.5% | 87.2% |
| 3596143 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.56 | 35.0 | 3.89e-01 | 85.1% | 78.6% |
| 3354291 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.56 | 44.0 | 2.99e-01 | 83.9% | 31.7% |
| 3581466 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.56 | 33.0 | 3.46e-01 | 77.0% | 63.7% |
| 5028691 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.56 | 41.0 | 3.84e-01 | 79.3% | 75.5% |
| 3520690 | 627.1.1.2 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 | 0.53 | 32.0 | 3.11e-01 | 71.3% | 52.0% |
| 184784 | 185.2.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › PfEMP1 core intracellular domain › PfEMP1 core intracellular domain › ATS | 0.53 | 35.0 | 3.63e-01 | 71.3% | 72.8% |
| 5054585 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.51 | 40.0 | 4.13e-01 | 86.2% | 98.8% |
| 3207663 | 605.4.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 | 0.51 | 36.0 | 3.33e-01 | 86.2% | 57.4% |
| 3437688 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.51 | 36.0 | 3.82e-01 | 78.2% | 86.7% |
D2
medium
residues 88-206
Domain cluster:
rep: BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00364__D61-165
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ndhA00 | 3.40.600.30 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › | 0.59 | 53.0 | 4.39e-01 | 99.2% | 55.1% |
| 2qmmA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.55 | 42.0 | 3.58e-01 | 79.8% | 56.4% |
| 6fmeA03 | 2.20.220.10 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases | 0.54 | 27.0 | 3.48e-01 | 86.6% | 88.7% |
| 2qwvA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.53 | 40.0 | 3.43e-01 | 79.8% | 59.0% |
| 4ls9B02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.52 | 38.0 | 3.81e-01 | 99.2% | 74.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4578666 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.55 | 42.0 | 4.21e-01 | 100.0% | 78.4% |
| 4938484 | 2488.1.1.8 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 | 0.54 | 40.0 | 3.39e-01 | 79.0% | 55.6% |
| 4983148 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 39.0 | 3.85e-01 | 99.2% | 74.4% |
| 5028297 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 39.0 | 3.93e-01 | 100.0% | 79.2% |
| 4437758 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 41.0 | 4.00e-01 | 100.0% | 77.7% |
| 2570277 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.52 | 39.0 | 3.82e-01 | 100.0% | 72.5% |
| 5041218 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 39.0 | 3.85e-01 | 99.2% | 75.4% |
| 5022411 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 38.0 | 3.94e-01 | 100.0% | 83.5% |
| 3291516 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 39.0 | 3.88e-01 | 99.2% | 78.1% |
| 3970793 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.50 | 41.0 | 4.34e-01 | 100.0% | 100.0% |
| 3291536 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.50 | 42.0 | 4.42e-01 | 93.3% | 100.0% |