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KP211958.1__AJK27499.1__PTIM40_72__00072

Bact-Vir

KP211958.1__AJK27499.1__PTIM40_72__00072

Identity

Accession:
KP211958 ↗
Kingdom:
phage

Quality

94.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Libanvirus› Cyanophage_P-TIM40

TaxID: 1589733

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-66
PDB
Domain cluster: rep: IMGVR_UViG_3300038450_000475-3300038450-Ga0427959_0008539_3_2555__D752-816
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 64.0 6.11e-01 95.2% 76.4%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.77 58.0 6.31e-01 96.8% 98.0%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 35.0 3.55e-01 79.0% 41.9%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 6.15e-01 96.8% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 6.46e-01 98.4% 95.2%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 6.09e-01 100.0% 94.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.99e-01 100.0% 89.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 63.0 5.15e-01 96.8% 60.2%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 6.28e-01 98.4% 96.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.97e-01 98.4% 89.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 63.0 6.33e-01 100.0% 98.4%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.70 60.0 6.05e-01 93.5% 96.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 63.0 6.06e-01 100.0% 89.9%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 56.0 5.72e-01 90.3% 91.5%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 52.0 5.13e-01 82.3% 77.3%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 49.0 4.86e-01 79.0% 73.4%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 51.0 5.03e-01 82.3% 81.8%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.67 60.0 4.68e-01 100.0% 64.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.62e-01 91.9% 93.5%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 56.0 5.30e-01 98.4% 96.1%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 54.0 4.47e-01 90.3% 81.7%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 5.28e-01 98.4% 86.7%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.62 55.0 4.21e-01 100.0% 63.2%
4v19O00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.62 54.0 4.33e-01 95.2% 64.3%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 39.0 3.31e-01 77.4% 38.3%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 4.11e-01 82.3% 94.4%
3itwA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 40.0 4.19e-01 87.1% 75.0%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 47.0 4.07e-01 83.9% 88.3%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.60 49.0 3.69e-01 93.5% 84.9%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 3.44e-01 83.9% 67.6%
2i00A03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 36.0 3.11e-01 87.1% 40.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 4.42e-01 83.9% 91.8%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 47.0 2.98e-01 93.5% 30.1%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 39.0 2.96e-01 72.6% 71.1%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.56 46.0 2.88e-01 96.8% 47.7%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 46.0 3.07e-01 96.8% 75.2%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.56 43.0 3.29e-01 87.1% 65.8%
2f9hA00 2.40.33.40 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › Phosphotransferase system, glucitol/sorbitol-specific IIA component 0.55 49.0 3.94e-01 100.0% 63.6%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.55 45.0 2.95e-01 91.9% 25.0%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 39.0 3.33e-01 77.4% 82.7%
1ep5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 3.63e-01 83.9% 58.1%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 3.36e-01 95.2% 45.8%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 43.0 3.22e-01 90.3% 85.4%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.60e-01 82.3% 62.8%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 46.0 3.84e-01 98.4% 72.5%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.69e-01 100.0% 91.6%
1vmoA00 2.100.10.20 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Vitelline membrane outer layer protein I (VOMI) 0.51 44.0 3.24e-01 95.2% 93.3%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 44.0 3.07e-01 100.0% 33.8%
6qm7K00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 42.0 3.06e-01 100.0% 86.4%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 36.0 3.16e-01 77.4% 53.1%
1rtuA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.50 37.0 3.22e-01 85.5% 64.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4369736 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.91 62.0 7.23e-01 95.2% 97.8%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.90 69.0 6.12e-01 100.0% 58.8%
4995901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 64.0 6.73e-01 100.0% 90.9%
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 58.0 6.66e-01 95.2% 100.0%
5075805 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 63.0 6.73e-01 96.8% 90.9%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 66.0 7.05e-01 100.0% 98.2%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 58.0 5.11e-01 90.3% 56.5%
3996872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 59.0 6.04e-01 82.3% 85.2%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.40e-01 96.8% 82.9%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 62.0 6.17e-01 100.0% 84.6%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.76 65.0 6.05e-01 100.0% 76.0%
5031165 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.76 67.0 6.45e-01 96.8% 84.3%
3215393 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.74 67.0 4.97e-01 100.0% 43.3%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.73 65.0 5.74e-01 100.0% 69.4%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 67.0 6.64e-01 98.4% 98.4%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 65.0 6.41e-01 98.4% 92.3%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 65.0 6.46e-01 100.0% 93.8%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 66.0 6.47e-01 100.0% 93.8%
4995669 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 64.0 5.92e-01 93.5% 100.0%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 66.0 6.53e-01 100.0% 96.9%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 65.0 6.38e-01 100.0% 93.8%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 65.0 6.41e-01 98.4% 95.4%
3709896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 64.0 5.71e-01 100.0% 88.2%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 62.0 6.17e-01 98.4% 96.9%
3170251 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.69 63.0 4.78e-01 100.0% 81.4%
4020073 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.98e-01 100.0% 97.1%
5065184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 45.0 5.13e-01 82.3% 93.3%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.68 62.0 5.94e-01 100.0% 88.6%
4030398 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 58.0 5.77e-01 93.5% 100.0%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.67 59.0 5.45e-01 98.4% 76.2%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 46.0 4.81e-01 80.6% 79.3%
4967427 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 56.0 4.28e-01 96.8% 61.4%
4386715 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.63 54.0 4.85e-01 93.5% 92.9%
5028974 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.63 57.0 4.49e-01 100.0% 74.2%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.63 46.0 4.98e-01 83.9% 98.0%
3993275 109.2.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.61 37.0 2.29e-01 77.4% 10.7%
3174658 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 46.0 4.09e-01 82.3% 64.4%
5065386 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.61 49.0 3.91e-01 90.3% 89.2%
4879890 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 3.79e-01 71.0% 57.9%
2389667 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.58 44.0 3.92e-01 83.9% 74.5%
5004589 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 46.0 3.85e-01 87.1% 81.8%
4982277 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 42.0 4.15e-01 75.8% 84.6%
3923261 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.57 44.0 3.59e-01 83.9% 62.5%
3641570 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.56 48.0 3.71e-01 98.4% 58.0%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 3.46e-01 80.6% 60.0%
None — 0.55 47.0 2.86e-01 95.2% 36.0%
3629714 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.55 45.0 3.94e-01 90.3% 97.9%
4011051 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 45.0 3.36e-01 90.3% 97.5%
3925547 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.55 41.0 2.96e-01 83.9% 36.9%
2754601 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 47.0 3.71e-01 100.0% 91.1%
3469876 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 47.0 2.96e-01 100.0% 34.0%
3818230 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.54 44.0 4.35e-01 93.5% 90.8%
3268444 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.54 37.0 2.62e-01 100.0% 22.0%
3871951 5.1.4.162 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD_LRWD1 0.54 46.0 2.88e-01 100.0% 88.4%
1924008 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.53 39.0 3.19e-01 82.3% 85.9%
4543255 11.1.1.335 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.53 43.0 3.62e-01 90.3% 75.2%
4900148 101.1.1.20 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.53 36.0 3.46e-01 72.6% 86.5%
4305565 11.1.1.335 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.53 43.0 3.74e-01 90.3% 72.6%
3245906 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 45.0 3.50e-01 100.0% 75.2%
3680934 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 33.0 3.69e-01 88.7% 97.5%
4042662 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 4.20e-01 88.7% 96.7%
3588447 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.50 43.0 2.92e-01 98.4% 88.7%
3267253 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.45e-01 87.1% 86.3%