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KP211958.1__AJK27517.1__PTIM40_90__00090

Bact-Vir

KP211958.1__AJK27517.1__PTIM40_90__00090

Identity

Accession:
KP211958 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Libanvirus› Cyanophage_P-TIM40

TaxID: 1589733

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-67
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3551102 193.1.1.15 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CEP44 0.56 45.0 3.76e-01 92.5% 50.0%
3612298 3279.1.1.0 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases 0.54 42.0 2.97e-01 83.6% 56.7%
D2 medium residues 68-159
PDB
Domain cluster: rep: IMGVR_UViG_3300014914_000852-3300014914-Ga0164311_100022737__D57-138
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.87 60.0 5.35e-01 98.9% 52.8%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.86 54.0 4.67e-01 98.9% 43.7%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.85 61.0 5.32e-01 100.0% 51.5%
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.84 62.0 5.47e-01 98.9% 55.6%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.82 59.0 5.22e-01 100.0% 53.5%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.78 62.0 5.19e-01 100.0% 52.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 52.0 4.51e-01 100.0% 59.6%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.66e-01 90.2% 98.6%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 50.0 3.97e-01 100.0% 51.5%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 43.0 4.26e-01 81.5% 100.0%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 43.0 4.28e-01 80.4% 100.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.56 32.0 3.88e-01 79.3% 100.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.56 32.0 3.85e-01 80.4% 100.0%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.41e-01 93.5% 90.0%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 43.0 4.64e-01 88.0% 100.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 29.0 3.77e-01 80.4% 97.9%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 36.0 4.27e-01 79.3% 100.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 35.0 4.15e-01 75.0% 100.0%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.38e-01 100.0% 92.5%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.54 40.0 3.81e-01 80.4% 100.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 34.0 4.01e-01 75.0% 98.4%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 35.0 3.78e-01 77.2% 80.8%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.81e-01 90.2% 98.2%
3gqsB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 40.0 3.93e-01 81.5% 93.1%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 43.0 4.20e-01 91.3% 100.0%
1fhvA02 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 3.48e-01 76.1% 96.8%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.52 40.0 4.03e-01 87.0% 80.0%
3kb5A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.51 44.0 3.57e-01 100.0% 66.8%
6xofA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.25e-01 96.7% 95.7%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.09e-01 96.7% 86.6%
3mwcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 3.33e-01 79.3% 94.8%
2fbeA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 43.0 3.52e-01 100.0% 66.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 34.0 3.91e-01 76.1% 100.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975571 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.90 64.0 4.85e-01 100.0% 35.3%
3947596 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.88 62.0 5.34e-01 100.0% 49.6%
3980140 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.87 58.0 4.99e-01 95.7% 46.7%
3963980 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.86 58.0 4.93e-01 98.9% 44.8%
154189 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.86 61.0 5.49e-01 98.9% 54.8%
4476649 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.85 63.0 5.45e-01 100.0% 52.6%
4277582 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.85 58.0 5.02e-01 96.7% 48.1%
3638174 4.1.1.320 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.67 42.0 4.20e-01 95.7% 61.1%
3972547 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.67 50.0 4.17e-01 100.0% 45.6%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 4.98e-01 82.6% 100.0%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.62 40.0 4.68e-01 80.4% 100.0%
3926672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.78e-01 82.6% 100.0%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.69e-01 91.3% 98.5%
3435006 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.59 40.0 4.54e-01 80.4% 98.5%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 44.0 4.67e-01 84.8% 92.5%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 37.0 4.30e-01 91.3% 100.0%
3722144 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.58 45.0 4.01e-01 84.8% 99.3%
3640516 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.56 39.0 3.85e-01 79.3% 66.0%
3715045 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 39.0 4.35e-01 93.5% 95.7%
3745132 9.8.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.56 44.0 3.96e-01 84.8% 89.2%
3640801 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.56 41.0 4.34e-01 87.0% 90.0%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 40.0 4.50e-01 94.6% 100.0%
3427504 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.56 40.0 4.47e-01 76.1% 100.0%
3243417 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 41.0 3.69e-01 79.3% 81.5%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 34.0 3.99e-01 76.1% 89.2%
3172078 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 48.0 3.59e-01 100.0% 38.3%
4951199 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 42.0 4.56e-01 90.2% 100.0%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 38.0 4.12e-01 81.5% 88.0%
3782038 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.76e-01 90.2% 68.0%
3709149 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.54 39.0 3.72e-01 77.2% 88.2%
3495652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.32e-01 85.9% 45.0%
3271679 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.33e-01 75.0% 69.7%
3503388 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 40.0 3.83e-01 88.0% 68.2%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 32.0 3.40e-01 72.8% 67.5%
3505111 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.52 34.0 3.42e-01 76.1% 65.6%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 33.0 3.96e-01 76.1% 100.0%
3191989 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 38.0 3.37e-01 79.3% 66.9%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 34.0 3.68e-01 77.2% 81.3%
3696482 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 34.0 3.44e-01 81.5% 67.4%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.51 43.0 4.14e-01 94.6% 97.3%
4933205 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 39.0 4.00e-01 83.7% 92.2%
3541996 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.51 34.0 2.71e-01 79.3% 33.2%
3919008 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.51 44.0 3.55e-01 100.0% 63.1%
3597786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.78e-01 80.4% 97.9%
3883217 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.51 44.0 3.49e-01 100.0% 59.5%
2700914 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 30.0 3.15e-01 91.3% 63.7%
3688937 10.12.1.29 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CDO_I 0.51 41.0 3.19e-01 100.0% 39.0%
3239092 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 35.0 3.02e-01 71.7% 82.6%