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KP211958.1__AJK27541.1__PTIM40_114__00114
Bact-VirKP211958.1__AJK27541.1__PTIM40_114__00114
Identity
- Accession:
- KP211958 ↗
- Kingdom:
- phage
Quality
94.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Libanvirus›
Cyanophage_P-TIM40
TaxID: 1589733
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-35
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lhtA01 | 6.10.80.20 | Special › Helix non-globular › DNA polymerase; domain 1 › | 0.70 | 52.0 | 3.92e-01 | 85.7% | 59.2% |
| 1yocA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 46.0 | 3.05e-01 | 100.0% | 31.7% |
| 2orwB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 39.0 | 2.80e-01 | 96.4% | 92.1% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 42.0 | 2.93e-01 | 100.0% | 38.0% |
| 7myqB02 | 1.10.1270.20 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 | 0.52 | 44.0 | 3.58e-01 | 100.0% | 83.6% |
| 1ajqB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 35.0 | 2.06e-01 | 100.0% | 7.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4291714 | 304.55.2.7 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › tRNA_synt_2f | 0.67 | 52.0 | 3.16e-01 | 100.0% | 11.7% |
| 4997854 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.65 | 43.0 | 3.09e-01 | 96.4% | 22.4% |
| 4648953 | 3860.1.1.130 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Yae1_N | 0.62 | 48.0 | 3.38e-01 | 100.0% | 27.0% |
| 3413742 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 45.0 | 3.03e-01 | 100.0% | 26.9% |
| 2771289 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.56 | 42.0 | 2.67e-01 | 85.7% | 20.8% |
| 3424980 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.54 | 38.0 | 2.73e-01 | 92.9% | 23.1% |
| 4458024 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.53 | 42.0 | 2.57e-01 | 89.3% | 19.5% |
D2
medium
residues 51-87
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19846.5 best | DUF6321 | 38.6 | 1.90e-09 | 100.0% | 47.2% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.70 | 53.0 | 3.69e-01 | 100.0% | 24.6% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.59 | 47.0 | 3.01e-01 | 100.0% | 56.2% |
| 1qvvA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.51 | 43.0 | 2.64e-01 | 97.3% | 25.6% |