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AIZ11382.1
Arc-VirKP238129__AIZ11382.1__X__00048
Identity
- Accession:
- KP238129 ↗
- Protein ID:
- AIZ11382.1 ↗
- Kingdom:
- archaea
Quality
88.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 25-75_81-116_193-283
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.65 | 35.0 | 4.62e-01 | 92.1% | 96.8% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.62 | 44.0 | 4.61e-01 | 93.8% | 79.6% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 31.0 | 4.19e-01 | 88.2% | 98.9% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.58 | 36.0 | 4.30e-01 | 92.1% | 91.5% |
| 1yg9A01 | 2.60.40.1960 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 23.0 | 3.50e-01 | 92.1% | 87.8% |
| 5eokA04 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.56 | 24.0 | 3.43e-01 | 93.3% | 84.3% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 34.0 | 3.73e-01 | 93.8% | 73.1% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 33.0 | 3.76e-01 | 92.7% | 76.1% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 4.04e-01 | 94.9% | 100.0% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.54 | 23.0 | 2.75e-01 | 85.4% | 54.7% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 4.31e-01 | 74.7% | 93.4% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.53 | 27.0 | 3.67e-01 | 94.9% | 93.5% |
| 2govA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.53 | 41.0 | 4.24e-01 | 91.6% | 83.2% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 33.0 | 3.99e-01 | 70.2% | 96.4% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 31.0 | 3.98e-01 | 93.8% | 100.0% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.53 | 47.0 | 4.12e-01 | 96.1% | 92.5% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.51 | 42.0 | 4.00e-01 | 96.1% | 74.3% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.50 | 28.0 | 3.12e-01 | 90.4% | 67.9% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.50 | 45.0 | 4.39e-01 | 94.9% | 89.6% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959045 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.68 | 48.0 | 5.26e-01 | 95.5% | 86.0% |
| 4965189 | 304.8.1.126 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26475 | 0.66 | 55.0 | 5.49e-01 | 98.3% | 83.2% |
| 2391478 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.65 | 35.0 | 4.62e-01 | 92.1% | 96.8% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.64 | 59.0 | 5.54e-01 | 97.2% | 87.6% |
| 2966256 | 304.55.1.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 | 0.64 | 37.0 | 4.72e-01 | 92.7% | 94.4% |
| 3925855 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.64 | 28.0 | 3.82e-01 | 94.4% | 78.9% |
| 4304749 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.63 | 51.0 | 4.45e-01 | 97.8% | 57.3% |
| 3947798 | 304.8.1.70 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA | 0.63 | 59.0 | 4.98e-01 | 99.4% | 70.7% |
| 3596967 | 304.46.1.0 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain | 0.62 | 43.0 | 4.57e-01 | 93.8% | 78.5% |
| 3991710 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.62 | 27.0 | 3.80e-01 | 89.3% | 85.0% |
| 4170426 | 304.8.1.70 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA | 0.62 | 59.0 | 4.93e-01 | 99.4% | 84.6% |
| 4173640 | 304.55.1.27 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Phage_GPA | 0.62 | 59.0 | 4.99e-01 | 99.4% | 87.6% |
| 4511949 | 304.48.1.74 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA | 0.62 | 59.0 | 5.23e-01 | 99.4% | 81.7% |
| 4030594 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.62 | 43.0 | 4.58e-01 | 93.3% | 78.8% |
| 2796430 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.62 | 34.0 | 4.37e-01 | 92.7% | 92.2% |
| 3786175 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.61 | 44.0 | 4.59e-01 | 93.8% | 79.8% |
| 4029116 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.61 | 25.0 | 3.39e-01 | 91.0% | 71.1% |
| 4447424 | 304.55.1.26 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › RepSA | 0.61 | 56.0 | 4.75e-01 | 97.2% | 91.3% |
| 3653135 | 101.1.2.594 ↗ | alpha arrays › HTH › HTH › winged helix domain › Helitron_like_N | 0.61 | 42.0 | 4.67e-01 | 97.2% | 87.5% |
| 3372454 | 304.55.1.20 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N, REP_ORF2-G2P | 0.60 | 54.0 | 4.96e-01 | 94.9% | 92.0% |
| 3289935 | 304.8.1.44 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › RepSA | 0.60 | 55.0 | 4.94e-01 | 97.2% | 90.0% |
| 4133039 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.60 | 49.0 | 5.08e-01 | 93.8% | 91.5% |
| 3381094 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.60 | 54.0 | 4.56e-01 | 97.2% | 76.5% |
| 3682672 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.58 | 53.0 | 4.38e-01 | 96.6% | 66.9% |
| 4400469 | 101.1.2.841 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27221 | 0.58 | 32.0 | 3.38e-01 | 91.0% | 58.9% |
| 3375241 | 304.8.1.23 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N | 0.58 | 52.0 | 4.32e-01 | 96.6% | 76.1% |
| 3915918 | 304.55.1.15 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N | 0.56 | 51.0 | 4.46e-01 | 96.1% | 85.3% |
| 3344616 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.56 | 51.0 | 4.90e-01 | 96.6% | 91.2% |
| None | — | 0.56 | 51.0 | 4.42e-01 | 97.2% | 70.9% | |
| 3678501 | 304.55.1.20 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N, REP_ORF2-G2P | 0.56 | 51.0 | 4.28e-01 | 96.6% | 64.2% |
| 3373540 | 304.55.1.15 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N | 0.56 | 50.0 | 4.45e-01 | 96.1% | 88.4% |
| 5112 | 304.55.1.10 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD | 0.56 | 33.0 | 3.76e-01 | 92.7% | 76.1% |
| 3369213 | 304.28.1.25 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Helitron_like_N, REP_ORF2-G2P | 0.55 | 50.0 | 4.83e-01 | 96.1% | 89.9% |
| 3342333 | 304.28.1.10 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Helitron_like_N | 0.55 | 41.0 | 4.16e-01 | 96.1% | 76.4% |
| 3377701 | 304.8.1.23 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N | 0.55 | 50.0 | 4.71e-01 | 96.1% | 92.9% |
| 3934465 | 304.4.1.52 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 | 0.54 | 47.0 | 4.23e-01 | 94.4% | 96.4% |
| 3926520 | 304.8.1.23 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N | 0.54 | 48.0 | 4.71e-01 | 93.8% | 91.6% |
| 4007464 | 304.55.1.19 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 | 0.53 | 47.0 | 4.65e-01 | 94.4% | 97.4% |
| 1491756 | 304.55.1.9 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 | 0.53 | 47.0 | 4.22e-01 | 96.1% | 89.5% |
| 4018928 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.53 | 45.0 | 3.90e-01 | 94.9% | 60.4% |
| 5056359 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.52 | 36.0 | 3.87e-01 | 89.3% | 82.7% |
| 1698645 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.51 | 42.0 | 3.76e-01 | 95.5% | 61.9% |
| 4880004 | 304.55.1.7 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N | 0.50 | 44.0 | 4.22e-01 | 93.8% | 84.1% |
| 5031797 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.50 | 37.0 | 2.93e-01 | 74.7% | 70.6% |
| 3952578 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.50 | 40.0 | 3.66e-01 | 96.1% | 63.2% |
D2
medium
residues 117-192
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.62 | 45.0 | 3.38e-01 | 76.3% | 35.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3249598 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.71 | 48.0 | 4.96e-01 | 75.0% | 74.3% |
| 3254598 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.63 | 45.0 | 4.70e-01 | 75.0% | 85.7% |
| 3864913 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.52 | 42.0 | 3.47e-01 | 94.7% | 67.7% |
| 4947051 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.52 | 43.0 | 3.06e-01 | 93.4% | 89.4% |