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AIZ11390.1

Arc-Vir

KP238129__AIZ11390.1__X__00056

Identity

Accession:
KP238129 ↗
Protein ID:
AIZ11390.1 ↗
Kingdom:
archaea

Quality

94.6 mean pLDDT

Taxonomy

Bicaudaviridae› Sulfolobus_monocaudavirus_SMV2

TaxID: 1580591

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-99
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 58.0 6.10e-01 100.0% 82.4%
2fmaA00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.66 35.0 4.28e-01 99.0% 84.7%
3n9uI00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 30.0 3.17e-01 92.9% 50.6%
7wezA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 29.0 3.32e-01 93.9% 57.3%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.62 37.0 3.19e-01 94.9% 37.6%
2divA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 31.0 3.33e-01 100.0% 52.9%
2m05A00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.61 35.0 4.17e-01 100.0% 86.2%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.60 41.0 4.23e-01 98.0% 75.3%
3s8sA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 30.0 2.99e-01 100.0% 43.9%
4iufA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 29.0 3.26e-01 99.0% 57.1%
3g2mA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 43.0 3.64e-01 78.8% 90.9%
3g8wB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 40.0 3.39e-01 99.0% 43.3%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 29.0 3.17e-01 99.0% 55.7%
5mmjv00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 29.0 3.22e-01 100.0% 56.2%
3hi9D00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 29.0 3.15e-01 100.0% 56.1%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 30.0 3.25e-01 100.0% 58.7%
3dr6B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 39.0 3.28e-01 99.0% 42.0%
1u6fA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 30.0 2.72e-01 100.0% 35.3%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 29.0 3.02e-01 100.0% 49.5%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.55 38.0 4.05e-01 97.0% 82.6%
4jxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 39.0 3.17e-01 100.0% 39.7%
3owcB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 40.0 3.34e-01 99.0% 44.7%
3lccA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 3.17e-01 98.0% 36.6%
4qu7A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 28.0 3.09e-01 76.8% 61.7%
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 38.0 3.50e-01 100.0% 56.5%
2ge3A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 35.0 3.03e-01 100.0% 40.9%
2j8aA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 29.0 3.06e-01 99.0% 56.3%
5cvdB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 3.13e-01 97.0% 36.3%
4c7qA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 30.0 3.26e-01 88.9% 66.3%
3bs9A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 28.0 3.11e-01 76.8% 65.8%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 3.41e-01 82.8% 87.9%
2f3jA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 27.0 2.75e-01 100.0% 45.9%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 30.0 3.14e-01 84.8% 62.9%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 3.13e-01 82.8% 95.8%
1wi8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 28.0 3.15e-01 78.8% 67.9%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 31.0 3.45e-01 96.0% 77.9%
4wkrA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 29.0 3.39e-01 79.8% 79.2%
1x4eA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 28.0 3.07e-01 83.8% 63.5%
3sxlA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 28.0 3.65e-01 81.8% 100.0%
3dluA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.50 34.0 3.50e-01 84.8% 72.6%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 29.0 3.05e-01 88.9% 61.1%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070930 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.88 72.0 7.11e-01 98.0% 81.0%
5049281 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.86 65.0 6.53e-01 97.0% 78.0%
5018590 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 66.0 6.27e-01 94.9% 69.6%
5054757 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 65.0 6.02e-01 93.9% 64.2%
5005264 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 67.0 5.56e-01 94.9% 50.3%
5065568 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 62.0 5.63e-01 98.0% 60.0%
5011607 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 72.0 6.28e-01 91.9% 64.3%
4996617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 65.0 5.89e-01 94.9% 63.6%
5011299 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 62.0 5.87e-01 100.0% 67.8%
5045862 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 65.0 5.88e-01 93.9% 63.8%
4943285 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 67.0 5.93e-01 98.0% 63.0%
4943784 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 65.0 5.95e-01 94.9% 66.4%
4941955 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 55.0 5.75e-01 89.9% 77.8%
4945179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 66.0 5.71e-01 100.0% 60.7%
4987371 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 60.0 5.66e-01 98.0% 70.4%
4955510 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 62.0 5.33e-01 93.9% 56.7%
5062643 101.1.2.138 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3860 0.76 56.0 6.18e-01 98.0% 96.2%
4940432 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 5.81e-01 99.0% 83.3%
5074554 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 56.0 4.39e-01 100.0% 40.0%
5003912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 68.0 5.73e-01 100.0% 71.2%
3853184 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.70 65.0 5.54e-01 100.0% 63.9%
3737548 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.65 31.0 3.03e-01 91.9% 39.8%
3657991 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.64 34.0 3.39e-01 100.0% 46.7%
4505598 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.63 32.0 2.85e-01 100.0% 34.1%
3820701 304.9.1.58 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nup35_RRM_2 0.62 33.0 3.54e-01 100.0% 57.6%
3824051 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 34.0 3.36e-01 100.0% 49.5%
3669676 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 32.0 3.13e-01 100.0% 42.7%
3637726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 54.0 5.27e-01 100.0% 91.8%
3619169 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 31.0 3.74e-01 100.0% 83.6%
4927015 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 31.0 3.40e-01 99.0% 58.7%
4961790 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 44.0 3.29e-01 77.8% 80.3%
3592279 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 29.0 3.09e-01 100.0% 50.0%
4992122 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.57 31.0 3.40e-01 99.0% 62.7%
4026343 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 40.0 4.07e-01 97.0% 74.7%
1872609 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.57 30.0 3.11e-01 100.0% 49.5%
3596783 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 40.0 3.89e-01 97.0% 63.5%
5064883 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 39.0 3.00e-01 98.0% 30.7%
4448813 2003.1.5.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.56 42.0 3.19e-01 78.8% 65.1%
4950495 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.56 30.0 3.22e-01 100.0% 57.5%
3605491 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.56 41.0 3.84e-01 97.0% 61.7%
3933395 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 32.0 3.40e-01 87.9% 63.5%
1786499 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 29.0 2.75e-01 99.0% 37.0%
4942516 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.56 43.0 3.29e-01 82.8% 83.8%
3966643 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 39.0 3.25e-01 99.0% 41.1%
3279365 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 42.0 3.28e-01 82.8% 85.1%
3174334 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.54 38.0 2.95e-01 97.0% 30.5%
5073032 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.54 41.0 3.08e-01 79.8% 74.7%
3839035 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 36.0 3.15e-01 100.0% 43.1%
5025196 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.54 31.0 3.36e-01 83.8% 68.8%
3700302 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 31.0 2.70e-01 78.8% 38.6%
4437131 2003.1.5.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.53 39.0 3.05e-01 76.8% 71.9%
None — 0.52 41.0 3.15e-01 98.0% 35.9%
4028975 2003.1.5.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.52 38.0 3.11e-01 77.8% 80.0%
4026146 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 29.0 3.22e-01 84.8% 69.2%
4017595 306.10.1.6 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF28980 0.51 40.0 3.78e-01 84.8% 98.4%
3630653 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 30.0 3.07e-01 86.9% 58.9%
4936933 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.51 30.0 3.17e-01 83.8% 65.9%
3693809 2003.1.5.52 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_PK 0.51 40.0 2.98e-01 98.0% 30.7%
4025055 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.51 37.0 3.84e-01 97.0% 82.1%
3683959 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 30.0 2.89e-01 83.8% 50.4%
4991606 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.50 28.0 3.10e-01 81.8% 66.3%