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ALG96803.1

Arc-Vir

KP282674__ALG96803.1__X__00001

Identity

Accession:
KP282674 ↗
Protein ID:
ALG96803.1 ↗
Kingdom:
archaea

Quality

51.8 mean pLDDT

Taxonomy

Ampullaviridae› Bottigliavirus› Acidianus_bottle-shaped_virus_3_strain_ABV3

TaxID: 1732174

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 180-257
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uavA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 44.0 4.26e-01 73.1% 58.8%
3iylB02 1.10.2050.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 0.69 46.0 3.87e-01 78.2% 40.3%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 45.0 3.68e-01 73.1% 35.3%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.67 46.0 4.88e-01 70.5% 92.9%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.65 44.0 4.32e-01 85.9% 63.2%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 41.0 3.47e-01 83.3% 42.0%
3oqiA00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.61 52.0 3.82e-01 96.2% 84.2%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.60 43.0 3.39e-01 74.4% 55.2%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 38.0 3.22e-01 94.9% 42.4%
2dk4A00 4.10.280.110 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain 0.57 38.0 3.84e-01 83.3% 68.4%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.56 40.0 3.61e-01 76.9% 89.7%
1j1uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 43.0 3.30e-01 85.9% 80.1%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.56 36.0 4.04e-01 84.6% 94.5%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.55 36.0 3.41e-01 92.3% 56.4%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 42.0 2.99e-01 88.5% 85.8%
3wfdB00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.53 46.0 2.90e-01 98.7% 75.7%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 37.0 3.64e-01 74.4% 69.4%
1w33A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.53 40.0 3.07e-01 82.1% 79.0%
1sg6A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.51 41.0 3.17e-01 92.3% 66.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003499 109.3.1.484 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF2238 0.72 51.0 3.59e-01 74.4% 24.2%
4287311 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.63 48.0 4.50e-01 84.6% 65.0%
3702921 148.1.3.10 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 0.60 41.0 4.25e-01 71.8% 81.3%
3765900 109.4.1.470 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 0.59 40.0 3.49e-01 70.5% 81.6%
4969772 2007.1.11.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains 0.59 48.0 3.98e-01 92.3% 60.0%
5056934 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 43.0 4.24e-01 84.6% 74.1%
4118017 4336.2.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 0.58 44.0 4.05e-01 82.1% 63.0%
3766742 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.56 42.0 3.66e-01 78.2% 94.8%
3195747 3788.1.1.0 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.56 44.0 4.65e-01 94.9% 98.6%
3742018 7094.1.1.2 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 0.56 43.0 4.04e-01 94.9% 67.4%
3615391 3671.1.1.0 ↗ alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain 0.55 44.0 4.58e-01 91.0% 98.6%
3717093 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 40.0 4.23e-01 84.6% 92.9%
4105691 603.1.1.108 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27599 0.51 40.0 2.88e-01 80.8% 46.0%
3681312 633.7.1.0 ↗ alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.50 43.0 3.40e-01 94.9% 52.1%
D2 medium residues 6-160
PDB