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KP339049.1__AJP61504.2__X__00181
Bact-VirKP339049.1__AJP61504.2__X__00181
Identity
- Accession:
- KP339049 ↗
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Taxonomy
TaxID: 1597976
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v4jA01 | 6.10.140.1420 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 34.0 | 3.27e-01 | 71.4% | 38.1% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.71 | 53.0 | 5.02e-01 | 83.9% | 65.7% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.63 | 47.0 | 4.13e-01 | 83.9% | 80.9% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.62 | 44.0 | 3.94e-01 | 78.6% | 51.2% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.62 | 48.0 | 4.22e-01 | 89.3% | 55.2% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.61 | 42.0 | 4.36e-01 | 83.9% | 76.9% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.59 | 41.0 | 3.70e-01 | 73.2% | 73.4% |
| 3brqB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 47.0 | 3.65e-01 | 91.1% | 84.1% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 42.0 | 3.82e-01 | 80.4% | 61.4% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.58 | 41.0 | 3.93e-01 | 76.8% | 82.1% |
| 2m35A00 | 1.10.60.50 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.57 | 44.0 | 4.56e-01 | 100.0% | 96.2% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.57 | 44.0 | 4.48e-01 | 85.7% | 83.9% |
| 3rotA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 47.0 | 3.58e-01 | 92.9% | 84.4% |
| 1d8cA03 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.56 | 41.0 | 3.22e-01 | 83.9% | 69.6% |
| 2mvtA00 | 1.10.60.50 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.56 | 41.0 | 4.35e-01 | 89.3% | 95.7% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.55 | 43.0 | 3.92e-01 | 83.9% | 67.6% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.55 | 41.0 | 3.87e-01 | 87.5% | 96.1% |
| 4am6A03 | 3.30.420.580 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 39.0 | 2.54e-01 | 76.8% | 57.0% |
| 2ld7A00 | 6.10.160.20 | Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.54 | 36.0 | 3.23e-01 | 76.8% | 43.6% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.52 | 44.0 | 3.83e-01 | 96.4% | 76.4% |
| 4p32B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 2.98e-01 | 96.4% | 37.4% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.52 | 38.0 | 2.66e-01 | 78.6% | 25.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3563252 | 389.3.1.22 ↗ | few secondary structure elements › EGF-like › LDL receptor-like module › LDL receptor-like module › PF30494 | 0.82 | 56.0 | 6.34e-01 | 71.4% | 100.0% |
| 3268369 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.74 | 54.0 | 4.54e-01 | 78.6% | 67.4% |
| 3811150 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.66 | 50.0 | 4.52e-01 | 80.4% | 60.0% |
| 4275437 | 5063.1.1.12 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › ApoO | 0.61 | 38.0 | 3.75e-01 | 89.3% | 60.0% |
| 5028668 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.58 | 45.0 | 2.82e-01 | 89.3% | 26.4% |
| 5009674 | 629.1.1.1 ↗ | alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del | 0.58 | 47.0 | 3.23e-01 | 96.4% | 36.4% |
| 4928145 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.58 | 41.0 | 3.63e-01 | 75.0% | 52.5% |
| 3965239 | 3121.1.1.3 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_2 | 0.57 | 40.0 | 3.54e-01 | 71.4% | 93.8% |
| 3930038 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 43.0 | 3.71e-01 | 87.5% | 51.1% |
| 3251999 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.57 | 47.0 | 3.00e-01 | 100.0% | 56.1% |
| 3664880 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.56 | 47.0 | 3.59e-01 | 96.4% | 75.5% |
| 4258966 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.55 | 43.0 | 3.56e-01 | 89.3% | 74.5% |
| 3389798 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.55 | 42.0 | 3.92e-01 | 82.1% | 78.6% |
| 3614578 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 44.0 | 3.82e-01 | 89.3% | 88.2% |
| 4496489 | 2498.4.1.0 ↗ | mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) | 0.53 | 41.0 | 2.95e-01 | 91.1% | 92.7% |
| 4575680 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.53 | 46.0 | 3.21e-01 | 100.0% | 53.5% |
| 3422289 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.50 | 40.0 | 3.20e-01 | 89.3% | 81.7% |
D2
high
residues 60-181
Domain cluster:
rep: KU935715.1__AND75289.1__ME3_128__00128__D432-531
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14284.12 best | PcfJ | 71.2 | 1.30e-19 | 89.3% | 62.5% |