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AJP62018.1

Arc-Vir

KP703175__AJP62018.1__X__00018

Identity

Accession:
KP703175 ↗
Protein ID:
AJP62018.1 ↗
Kingdom:
archaea

Quality

71.4 mean pLDDT

Taxonomy

TaxID: 1605378

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-39
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 50.0 3.82e-01 76.9% 35.2%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.69 51.0 3.85e-01 82.1% 46.9%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 52.0 3.64e-01 84.6% 39.8%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 47.0 3.26e-01 76.9% 24.8%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 47.0 4.03e-01 76.9% 47.6%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 46.0 3.16e-01 76.9% 32.9%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.64 51.0 3.83e-01 97.4% 63.2%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.64 52.0 3.82e-01 92.3% 37.6%
1ckeA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 47.0 2.95e-01 79.5% 24.1%
7ob9B02 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.63 52.0 3.97e-01 100.0% 65.7%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 3.52e-01 89.7% 28.7%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 4.34e-01 79.5% 91.5%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 44.0 3.01e-01 82.1% 19.7%
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 44.0 4.29e-01 79.5% 70.2%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 45.0 3.08e-01 76.9% 38.2%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 46.0 3.47e-01 87.2% 41.1%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 45.0 3.52e-01 82.1% 62.0%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 43.0 2.66e-01 82.1% 39.1%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 40.0 3.19e-01 74.4% 74.7%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 44.0 2.70e-01 82.1% 11.8%
4j4hA01 3.40.50.12150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 2.88e-01 74.4% 66.7%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 40.0 2.64e-01 76.9% 17.7%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 41.0 3.09e-01 79.5% 38.1%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 40.0 3.04e-01 74.4% 76.7%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.57 39.0 2.51e-01 71.8% 67.6%
4hziB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 38.0 2.39e-01 71.8% 16.3%
4m0nA02 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.57 38.0 3.16e-01 71.8% 92.2%
8ckpA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 41.0 2.57e-01 87.2% 24.5%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 39.0 3.16e-01 82.1% 57.4%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.53 40.0 3.19e-01 82.1% 46.2%
5i92F01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 38.0 2.56e-01 82.1% 26.1%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 2.80e-01 71.8% 77.2%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 37.0 2.65e-01 82.1% 45.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 37.0 2.84e-01 82.1% 42.2%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 38.0 2.53e-01 82.1% 24.6%
1pfkA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.49e-01 82.1% 97.4%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4049910 375.14.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.80 53.0 5.05e-01 71.8% 60.0%
3347231 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.76 52.0 3.54e-01 71.8% 21.5%
3666644 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.74 50.0 5.27e-01 76.9% 80.0%
4205842 2003.1.5.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 0.73 49.0 2.96e-01 74.4% 10.4%
3483955 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.71 52.0 4.01e-01 79.5% 37.6%
4290521 2484.1.1.91 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like 0.70 53.0 3.19e-01 82.1% 24.9%
1866795 2484.1.1.91 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like 0.70 52.0 3.22e-01 82.1% 28.8%
4929446 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.69 50.0 3.36e-01 82.1% 20.0%
3585826 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 48.0 4.85e-01 76.9% 100.0%
3286579 2003.1.10.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Lant_dehydr_N 0.68 50.0 3.75e-01 79.5% 41.1%
411665 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.68 52.0 3.78e-01 87.2% 73.7%
3789900 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.68 54.0 3.78e-01 92.3% 28.1%
3797418 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 49.0 3.43e-01 79.5% 39.2%
3709555 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.67 49.0 4.49e-01 82.1% 65.5%
4276264 375.8.1.5 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › PF26372 0.67 46.0 4.44e-01 71.8% 68.9%
3319016 2007.5.1.17 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.67 47.0 2.84e-01 76.9% 11.4%
4181687 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.66 52.0 3.96e-01 92.3% 69.9%
3839942 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.65 54.0 3.07e-01 92.3% 18.5%
4438733 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.65 50.0 3.83e-01 92.3% 71.4%
3365178 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 48.0 4.15e-01 82.1% 53.8%
3503283 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 49.0 4.71e-01 82.1% 71.1%
3438045 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.65 47.0 4.12e-01 82.1% 55.4%
3254253 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.65 53.0 3.65e-01 100.0% 72.3%
5049528 7601.1.1.2 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 0.65 50.0 3.00e-01 87.2% 19.4%
3212281 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.64 46.0 2.73e-01 79.5% 16.9%
4437258 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.64 50.0 3.71e-01 92.3% 64.3%
4425056 64.1.1.4 beta meanders › WW domain-like › WW domain › WW domain › WW_1 0.64 42.0 4.31e-01 71.8% 74.3%
3672734 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.64 53.0 3.90e-01 100.0% 63.5%
3494194 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 46.0 2.65e-01 84.6% 7.6%
4951908 2007.1.14.32 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › 2-thiour_desulf 0.64 48.0 2.99e-01 87.2% 30.2%
3975953 243.1.1.74 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2950 0.63 48.0 3.55e-01 82.1% 64.8%
3924082 386.1.1.64 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.63 44.0 3.65e-01 76.9% 41.3%
4171942 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.62 51.0 3.88e-01 97.4% 70.2%
3622446 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 46.0 3.81e-01 82.1% 64.3%
4639331 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.61 46.0 3.41e-01 89.7% 73.6%
4019671 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.61 45.0 2.68e-01 76.9% 10.2%
4030297 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.61 52.0 3.20e-01 94.9% 39.0%
3838045 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.46e-01 76.9% 91.4%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.60 45.0 2.54e-01 82.1% 8.3%
4980974 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 51.0 3.21e-01 100.0% 51.7%
4026598 2008.1.1.86 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.60 45.0 3.40e-01 87.2% 67.0%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.60 43.0 3.66e-01 82.1% 54.7%
3550365 331.23.1.2 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.60 42.0 3.49e-01 76.9% 66.7%
4211411 386.1.1.231 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF2709 0.60 43.0 3.42e-01 79.5% 37.6%
3838957 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.60 45.0 3.78e-01 82.1% 72.9%
4998998 2007.1.1.21 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › PylD_N 0.60 43.0 3.13e-01 79.5% 78.3%
4971974 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 48.0 3.32e-01 100.0% 63.1%
3810963 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 45.0 3.06e-01 87.2% 52.5%
3929033 59.1.1.0 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.59 42.0 3.52e-01 79.5% 45.0%
3503838 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.59 46.0 3.67e-01 92.3% 43.3%
4937577 375.1.1.53 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.59 42.0 4.35e-01 79.5% 91.4%
3781329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 3.48e-01 79.5% 40.0%
3251582 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 43.0 3.32e-01 89.7% 39.1%
4013690 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.58 42.0 3.87e-01 82.1% 63.6%
4865239 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.58 40.0 4.09e-01 79.5% 92.3%
3209881 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.57 40.0 2.24e-01 82.1% 5.3%
4978994 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.57 38.0 2.91e-01 82.1% 26.7%
3839750 2003.1.15.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.57 48.0 3.04e-01 97.4% 18.1%
3503021 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.57 41.0 4.24e-01 79.5% 100.0%
4930870 2007.1.1.21 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › PylD_N 0.56 40.0 2.98e-01 82.1% 76.7%
3847647 109.4.1.544 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ParcG 0.55 43.0 2.89e-01 94.9% 36.6%
3244218 3409.1.1.0 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain 0.55 39.0 2.69e-01 79.5% 92.3%
3576759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 3.39e-01 87.2% 72.9%
3272987 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 38.0 2.40e-01 82.1% 27.1%
3163777 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.50 38.0 3.13e-01 82.1% 88.7%
3926232 3409.1.1.0 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain 0.50 34.0 2.44e-01 76.9% 92.7%