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AJP62039.1
Arc-VirKP703175__AJP62039.1__X__00039
Identity
- Accession:
- KP703175 ↗
- Protein ID:
- AJP62039.1 ↗
- Kingdom:
- archaea
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-61
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 48.0 | 3.36e-01 | 72.7% | 28.4% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.65 | 38.0 | 3.81e-01 | 90.9% | 58.2% |
| 5dajD00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 56.0 | 3.86e-01 | 100.0% | 54.7% |
| 4mqvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 50.0 | 4.84e-01 | 92.7% | 87.7% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 4.17e-01 | 90.9% | 54.5% |
| 2i6xA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 42.0 | 3.95e-01 | 70.9% | 71.8% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.12e-01 | 92.7% | 55.8% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 4.31e-01 | 92.7% | 71.1% |
| 2y75A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 3.55e-01 | 85.5% | 44.0% |
| 7zhgO01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 42.0 | 3.97e-01 | 81.8% | 62.1% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 39.0 | 3.70e-01 | 78.2% | 66.2% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.50 | 40.0 | 3.43e-01 | 100.0% | 91.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938254 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 69.0 | 6.26e-01 | 87.3% | 72.9% |
| 4295835 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 57.0 | 6.18e-01 | 85.5% | 97.8% |
| 5024512 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 47.0 | 4.89e-01 | 70.9% | 90.0% |
| 5014241 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.67 | 55.0 | 4.82e-01 | 96.4% | 60.0% |
| 3390087 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.67 | 53.0 | 4.85e-01 | 92.7% | 66.7% |
| 3812225 | 101.1.1.108 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › gag_pre-integrs | 0.64 | 41.0 | 4.26e-01 | 76.4% | 72.0% |
| 1695424 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.64 | 47.0 | 4.42e-01 | 87.3% | 64.3% |
| 3787138 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 41.0 | 4.23e-01 | 78.2% | 76.0% |
| 3381497 | 109.4.1.1296 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long, TPR_24 | 0.60 | 51.0 | 3.45e-01 | 100.0% | 25.3% |
| 3457424 | 109.4.1.1330 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long | 0.58 | 48.0 | 3.62e-01 | 100.0% | 37.0% |
| 4366692 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.55 | 40.0 | 3.60e-01 | 80.0% | 57.5% |
| 3337105 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 41.0 | 3.58e-01 | 90.9% | 89.0% |
| 3457901 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.54 | 41.0 | 3.06e-01 | 87.3% | 91.8% |
| 3958228 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.52 | 44.0 | 3.55e-01 | 98.2% | 69.2% |
| 5000884 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.52 | 43.0 | 2.94e-01 | 100.0% | 25.4% |
D2
medium
residues 70-116
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 56.0 | 5.21e-01 | 100.0% | 87.7% |
| 4mqvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 53.0 | 4.93e-01 | 100.0% | 90.8% |
| 2fswA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 53.0 | 4.31e-01 | 100.0% | 58.8% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.60 | 38.0 | 3.38e-01 | 80.9% | 45.5% |
| 2oyrA01 | 3.40.1630.10 | Alpha Beta › 3-Layer(aba) Sandwich › S-adenosyl-L-methionine-dependent methyltransferases › YhiQ-like domain | 0.57 | 38.0 | 3.61e-01 | 76.6% | 54.5% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.56 | 43.0 | 3.33e-01 | 89.4% | 44.5% |
| 2e2oA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 44.0 | 3.10e-01 | 97.9% | 79.2% |
| 2hlzA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 46.0 | 2.83e-01 | 100.0% | 16.9% |
| 3kjxD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 42.0 | 3.87e-01 | 89.4% | 78.7% |
| 4ex6A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 38.0 | 3.49e-01 | 85.1% | 80.6% |
| 2vkjA00 | 1.20.58.2030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 41.0 | 3.38e-01 | 100.0% | 63.2% |
| 1yisA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.51 | 40.0 | 2.53e-01 | 97.9% | 78.0% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.51 | 35.0 | 3.14e-01 | 72.3% | 54.8% |
| 1z2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 3.02e-01 | 97.9% | 86.0% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.50 | 38.0 | 3.61e-01 | 91.5% | 77.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938254 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 76.0 | 6.54e-01 | 93.6% | 70.0% |
| 3385906 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 56.0 | 5.42e-01 | 100.0% | 89.1% |
| 1147602 | 314.1.1.7 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › AsnA | 0.65 | 45.0 | 2.96e-01 | 76.6% | 17.0% |
| 4290973 | 3498.1.1.2 ↗ | alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 | 0.64 | 51.0 | 4.97e-01 | 95.7% | 96.4% |
| 3271029 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.59 | 51.0 | 3.18e-01 | 100.0% | 77.9% |
| 4951831 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.57 | 50.0 | 3.05e-01 | 100.0% | 23.3% |
| 4537810 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.57 | 40.0 | 2.73e-01 | 78.7% | 75.1% |