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AJP62042.1

Arc-Vir

KP703175__AJP62042.1__X__00042

Identity

Accession:
KP703175 ↗
Protein ID:
AJP62042.1 ↗
Kingdom:
archaea

Quality

83.3 mean pLDDT

Taxonomy

ANMV-1_virus

TaxID: 1605378

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-119
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 41.0 4.45e-01 91.3% 64.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.60 26.0 3.63e-01 73.1% 85.4%
1yeyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 41.0 3.92e-01 72.1% 85.5%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.07e-01 74.0% 77.4%
2d0bA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 48.0 3.72e-01 92.3% 47.5%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 40.0 3.12e-01 98.1% 35.9%
3t6pA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 32.0 3.86e-01 84.6% 92.4%
3wihA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.38e-01 82.7% 67.0%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 39.0 3.11e-01 98.1% 37.0%
1e9gB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.53 38.0 2.85e-01 76.9% 78.1%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 33.0 3.53e-01 94.2% 76.4%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 37.0 3.73e-01 76.0% 97.1%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 25.0 2.75e-01 76.0% 55.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3797524 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 40.0 4.20e-01 91.3% 58.9%
3737669 230.1.1.4 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.67 55.0 5.24e-01 88.5% 90.0%
3451832 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 46.0 4.95e-01 98.1% 83.3%
4936297 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.64 46.0 3.86e-01 74.0% 87.4%
3390004 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 34.0 3.42e-01 98.1% 50.9%
3823735 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 42.0 4.57e-01 98.1% 85.9%
3532622 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 30.0 2.93e-01 88.5% 42.5%
1141934 3162.1.1.1 ↗ a+b two layers › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › DUF6840 0.58 39.0 4.06e-01 74.0% 75.0%
869258 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.57 41.0 4.05e-01 75.0% 82.0%
5054405 606.1.1.1 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.56 35.0 3.62e-01 85.6% 65.0%
4554618 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.55 40.0 3.13e-01 98.1% 35.8%
4403731 7506.1.1.1 ↗ a/b three-layered sandwiches › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › GerA 0.55 41.0 3.98e-01 79.8% 80.0%
4956142 2484.1.1.16 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII 0.53 44.0 3.80e-01 88.5% 63.1%
3606532 2484.6.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.53 27.0 2.91e-01 90.4% 54.4%
5043207 2484.1.1.16 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII 0.52 41.0 3.26e-01 83.7% 45.8%
3236101 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 32.0 3.29e-01 92.3% 62.0%
4948261 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.52 36.0 3.11e-01 72.1% 73.1%
3831854 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 36.0 4.06e-01 73.1% 100.0%
1834128 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.50 43.0 2.86e-01 94.2% 47.0%