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AJP62054.1

Arc-Vir

KP703175__AJP62054.1__X__00054

Identity

Accession:
KP703175 ↗
Protein ID:
AJP62054.1 ↗
Kingdom:
archaea

Quality

91.0 mean pLDDT

Taxonomy

ANMV-1_virus

TaxID: 1605378

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-54_73-133_256-279
PDB
Domain cluster: rep: IMGVR_UViG_3300001446_000118-3300001446-JGI20130J15133_100131816__D5-70_91-146_246-277
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.82 63.0 6.18e-01 80.0% 95.2%
3dktA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.75 69.0 6.35e-01 99.3% 92.3%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.70 22.0 2.87e-01 100.0% 46.8%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.67 41.0 4.12e-01 99.3% 59.3%
3f8uD03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 27.0 3.04e-01 76.3% 52.8%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 31.0 3.21e-01 91.9% 58.4%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 41.0 3.08e-01 82.2% 86.6%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 27.0 3.31e-01 88.9% 84.4%
6w08A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.50 41.0 3.14e-01 90.4% 78.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4313471 2485.3.1.11 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.80 65.0 4.86e-01 83.7% 82.3%
4955362 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.76 66.0 5.40e-01 91.9% 93.2%
4991535 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.75 70.0 5.68e-01 100.0% 93.5%
5081487 2485.3.1.10 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.75 58.0 4.58e-01 80.7% 93.4%
3965498 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.75 60.0 4.47e-01 83.7% 87.3%
3946670 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.75 69.0 5.39e-01 98.5% 90.2%
2724409 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.74 68.0 5.42e-01 100.0% 90.9%
4988094 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.72 66.0 5.26e-01 97.8% 92.9%
4241362 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.72 66.0 5.06e-01 100.0% 93.6%
3952452 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.70 63.0 4.85e-01 96.3% 89.1%
4890673 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.70 57.0 4.20e-01 86.7% 84.5%
5011908 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.70 62.0 5.04e-01 94.8% 88.3%
4849088 2485.3.1.8 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein 0.69 51.0 4.52e-01 77.8% 60.7%
4031028 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.69 62.0 4.87e-01 98.5% 90.4%
3627282 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.68 46.0 5.19e-01 77.8% 91.0%
3586352 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.66 44.0 4.92e-01 77.8% 86.7%
3587769 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.66 59.0 4.65e-01 100.0% 92.4%
5083777 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.66 60.0 4.57e-01 98.5% 92.0%
3588084 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.63 57.0 4.38e-01 100.0% 92.5%
3992388 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.61 45.0 4.64e-01 83.7% 82.4%
4522746 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 30.0 2.94e-01 71.9% 40.6%
5029745 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.57 34.0 4.15e-01 75.6% 96.2%
3705145 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.53 38.0 3.46e-01 72.6% 92.2%
3997566 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.53 47.0 4.28e-01 96.3% 77.2%
D2 high residues 136-245
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.80 58.0 6.24e-01 90.0% 88.2%
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.69 53.0 5.46e-01 96.4% 83.8%
2bx2L02 3.40.1260.20 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › Ribonuclease E, catalytic domain 0.61 40.0 4.07e-01 75.5% 66.4%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.61 54.0 5.06e-01 97.3% 89.1%
2i4rB00 3.40.50.10580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F 0.55 33.0 3.73e-01 90.9% 81.2%
2yv4A00 3.40.50.11030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Threonylcarbamoyl-AMP synthase, C-terminal domain 0.51 36.0 3.70e-01 92.7% 79.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955362 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.82 63.0 4.83e-01 100.0% 37.6%
3603036 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.82 64.0 4.77e-01 100.0% 35.3%
4991535 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.81 62.0 4.70e-01 100.0% 35.9%
2831773 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.81 60.0 4.42e-01 100.0% 32.0%
5002389 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.77 66.0 4.77e-01 100.0% 35.4%
2553816 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.74 62.0 4.57e-01 100.0% 36.6%
3942344 2485.3.1.19 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 0.70 65.0 4.64e-01 100.0% 36.3%
2989356 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.60 55.0 3.99e-01 100.0% 41.2%
2989289 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.60 55.0 3.87e-01 100.0% 35.3%
4099448 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.59 34.0 3.62e-01 87.3% 63.0%
4946151 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 36.0 3.61e-01 89.1% 59.6%
3741882 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.57 47.0 3.39e-01 90.9% 96.5%
4020622 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 46.0 3.26e-01 93.6% 95.8%
3765436 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.54 44.0 3.22e-01 91.8% 93.9%
4982069 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.53 44.0 3.40e-01 94.5% 68.2%
3877310 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 44.0 2.91e-01 93.6% 60.9%
4992752 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 43.0 3.82e-01 100.0% 89.0%