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KP719133.1__AKA60978.1__X__00025

Bact-Vir

KP719133.1__AKA60978.1__X__00025

Identity

Accession:
KP719133 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 64-120
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.79 58.0 3.99e-01 89.5% 24.6%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 57.0 4.15e-01 84.2% 35.1%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.72 64.0 4.63e-01 100.0% 67.3%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.70 61.0 4.69e-01 100.0% 45.5%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.69 51.0 3.65e-01 78.9% 61.4%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 55.0 3.52e-01 91.2% 23.5%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.66 56.0 4.41e-01 100.0% 52.3%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.65 45.0 3.81e-01 86.0% 42.2%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 54.0 4.19e-01 100.0% 53.4%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.63 50.0 3.75e-01 98.2% 34.5%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 49.0 3.79e-01 91.2% 42.0%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 3.82e-01 89.5% 47.7%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 51.0 4.43e-01 91.2% 64.4%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.46e-01 96.5% 75.6%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 48.0 3.03e-01 91.2% 24.3%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 51.0 3.31e-01 100.0% 63.5%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.60 52.0 4.00e-01 98.2% 44.0%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.04e-01 98.2% 34.8%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.59 46.0 4.44e-01 86.0% 76.9%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 49.0 3.16e-01 100.0% 28.3%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.90e-01 94.7% 48.6%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.92e-01 94.7% 60.0%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.65e-01 94.7% 48.5%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 48.0 3.11e-01 93.0% 50.4%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 50.0 3.51e-01 100.0% 32.4%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.64e-01 82.5% 75.8%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 46.0 2.96e-01 100.0% 64.1%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 45.0 3.00e-01 89.5% 84.7%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.56 41.0 2.90e-01 82.5% 23.3%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 44.0 2.76e-01 87.7% 15.2%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 4.26e-01 100.0% 84.5%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 3.61e-01 100.0% 55.4%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 46.0 3.05e-01 93.0% 55.0%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 47.0 3.83e-01 96.5% 69.1%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.87e-01 100.0% 25.9%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 46.0 3.06e-01 91.2% 88.2%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.72e-01 91.2% 61.4%
1g0uE00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 44.0 2.93e-01 89.5% 85.7%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.54 39.0 3.46e-01 82.5% 50.5%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 42.0 2.91e-01 100.0% 50.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944439 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.77 69.0 5.05e-01 100.0% 40.0%
3512269 79.1.1.16 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.66 60.0 5.12e-01 100.0% 77.8%
3269422 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 49.0 3.13e-01 78.9% 41.9%
165196 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.66 56.0 4.41e-01 100.0% 52.3%
4998236 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.66 59.0 3.48e-01 100.0% 23.7%
3237854 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.65 57.0 4.55e-01 100.0% 60.9%
3168414 4099.1.1.46 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30283 0.65 57.0 4.44e-01 100.0% 56.0%
3419997 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.64 51.0 4.14e-01 89.5% 45.9%
3197622 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.64 52.0 4.24e-01 89.5% 60.0%
4003224 9.1.1.48 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.63 53.0 3.75e-01 100.0% 30.0%
4009137 274.1.1.12 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.63 55.0 3.94e-01 100.0% 38.8%
3226049 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.63 50.0 3.81e-01 91.2% 66.2%
3344712 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 52.0 3.94e-01 98.2% 79.4%
5047148 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.63 54.0 3.37e-01 100.0% 33.0%
4986209 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 3.55e-01 78.9% 37.1%
3241736 9.1.1.48 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.61 54.0 3.72e-01 100.0% 29.2%
3999814 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.61 51.0 3.74e-01 100.0% 44.0%
3781523 243.1.1.42 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MMU163 0.61 44.0 3.41e-01 80.7% 35.7%
4946568 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 52.0 2.97e-01 100.0% 19.7%
3377087 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 48.0 3.02e-01 94.7% 25.9%
3924615 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.60 47.0 3.73e-01 91.2% 70.4%
4977467 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 52.0 4.34e-01 100.0% 60.0%
4567929 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.60 49.0 3.00e-01 91.2% 27.0%
4934530 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.60 48.0 3.27e-01 86.0% 97.9%
4946869 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 49.0 3.52e-01 100.0% 62.7%
3596746 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.60 52.0 3.43e-01 100.0% 41.3%
3332798 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.60 49.0 3.52e-01 93.0% 76.0%
4166560 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 51.0 3.53e-01 100.0% 42.5%
5073182 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 45.0 3.65e-01 82.5% 47.2%
4556297 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.58 47.0 3.19e-01 87.7% 96.0%
3969040 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.58 47.0 3.11e-01 96.5% 20.4%
3243776 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.58 47.0 3.85e-01 91.2% 51.8%
3828636 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 45.0 3.53e-01 91.2% 65.7%
4059480 881.1.1.37 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.58 45.0 3.32e-01 91.2% 31.4%
3191231 210.1.1.3 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Pr_beta_C 0.58 48.0 3.18e-01 91.2% 85.6%
3739251 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.78e-01 98.2% 23.8%
3576754 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.57 45.0 3.71e-01 89.5% 59.1%
3610630 71.1.1.19 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.57 47.0 3.19e-01 100.0% 23.4%
3415137 5.1.4.394 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_FAM234A_B 0.57 43.0 2.59e-01 89.5% 16.2%
3479088 210.1.1.0 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.57 48.0 3.17e-01 91.2% 87.0%
3908924 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.57 46.0 3.02e-01 91.2% 40.8%
3785954 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.56 46.0 2.86e-01 98.2% 33.8%
3680270 2004.1.1.567 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23 0.56 48.0 2.83e-01 100.0% 23.9%
3190371 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 44.0 3.38e-01 87.7% 44.6%
3238125 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.77e-01 100.0% 78.4%
5079500 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 42.0 3.01e-01 89.5% 27.8%
3258377 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.54 48.0 4.13e-01 100.0% 67.8%
3422058 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 47.0 3.03e-01 98.2% 38.1%
4977196 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 46.0 3.05e-01 100.0% 75.3%
3272765 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.53 43.0 3.71e-01 91.2% 58.9%
4890882 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.50 42.0 3.34e-01 96.5% 57.1%
D2 medium residues 229-340
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 48.0 1.70e-12 42.9% 87.9%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 5.62e-01 88.4% 88.2%
3gudA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.52e-01 81.2% 96.6%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 40.0 4.11e-01 91.1% 73.4%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 47.0 4.27e-01 92.9% 71.6%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 45.0 4.25e-01 91.1% 77.4%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 32.0 2.30e-01 82.1% 21.1%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 27.0 2.66e-01 75.9% 47.1%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 26.0 3.50e-01 78.6% 96.5%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.51 24.0 2.70e-01 93.8% 53.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944436 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.86 75.0 7.57e-01 98.2% 93.6%
1509442 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.76 64.0 5.71e-01 89.3% 96.7%
3580027 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 42.0 3.44e-01 92.9% 40.0%
3931606 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 42.0 4.18e-01 92.9% 73.0%
3488697 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 46.0 3.32e-01 90.2% 58.9%
4996551 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 48.0 4.42e-01 91.1% 74.3%
3580612 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 40.0 3.63e-01 76.8% 100.0%
5040732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 4.16e-01 82.1% 98.2%
4028284 327.11.2.11 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.52 32.0 3.07e-01 86.6% 54.6%
3380612 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.51 39.0 3.67e-01 82.1% 77.9%