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KP792622.1__AKA60253.1__P8625_02__00002

Bact-Vir

KP792622.1__AKA60253.1__P8625_02__00002

Identity

Accession:
KP792622 ↗
Kingdom:
phage

Quality

70.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.70 51.0 4.47e-01 77.0% 56.7%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.70 44.0 4.04e-01 80.3% 49.4%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 41.0 4.14e-01 100.0% 59.7%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.68 46.0 3.26e-01 70.5% 70.7%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.66 38.0 3.44e-01 75.4% 41.7%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.65 39.0 3.54e-01 80.3% 45.7%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 39.0 3.89e-01 77.0% 59.7%
4jlxA02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.63 54.0 4.03e-01 100.0% 83.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 3.47e-01 73.8% 48.4%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 43.0 3.40e-01 73.8% 40.4%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 47.0 4.38e-01 93.4% 64.9%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.63 55.0 4.36e-01 96.7% 73.3%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 55.0 4.26e-01 100.0% 83.3%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 45.0 3.36e-01 78.7% 43.3%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.62 43.0 3.49e-01 73.8% 44.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 53.0 4.18e-01 98.4% 68.7%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.62 42.0 3.52e-01 70.5% 57.7%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 54.0 4.21e-01 100.0% 71.1%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.84e-01 91.8% 51.1%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.60 49.0 3.15e-01 91.8% 88.4%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 49.0 3.30e-01 91.8% 41.2%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 47.0 3.90e-01 86.9% 87.0%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 38.0 3.38e-01 70.5% 44.0%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 51.0 4.50e-01 98.4% 93.3%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.57 39.0 2.20e-01 98.4% 6.4%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 40.0 3.12e-01 73.8% 47.4%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 30.0 3.32e-01 91.8% 60.9%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.57 44.0 3.07e-01 95.1% 27.0%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 38.0 2.89e-01 72.1% 50.6%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.56 42.0 3.77e-01 85.2% 68.4%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 40.0 3.37e-01 78.7% 46.5%
2zbiA02 3.30.70.2120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.76e-01 90.2% 90.8%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 45.0 2.97e-01 95.1% 92.2%
4lw2A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 43.0 3.42e-01 88.5% 57.9%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 46.0 2.85e-01 100.0% 94.0%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 41.0 3.53e-01 83.6% 69.5%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 48.0 4.06e-01 98.4% 81.8%
3cbfA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 40.0 3.09e-01 88.5% 44.0%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.33e-01 100.0% 49.5%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 41.0 2.58e-01 90.2% 56.8%
6d0aA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 41.0 3.45e-01 88.5% 68.7%
4q6rA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 40.0 3.29e-01 88.5% 50.4%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 2.97e-01 95.1% 51.0%
1u08A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 43.0 3.42e-01 96.7% 76.1%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 2.90e-01 85.2% 29.7%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 44.0 3.56e-01 95.1% 85.4%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 38.0 3.90e-01 96.7% 86.2%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 37.0 3.33e-01 72.1% 81.2%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 42.0 2.49e-01 96.7% 27.7%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 43.0 3.61e-01 95.1% 91.2%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 2.84e-01 100.0% 95.8%
4dwsA01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 41.0 3.42e-01 96.7% 72.4%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 2.98e-01 100.0% 39.5%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.50 33.0 3.21e-01 90.2% 58.6%
3rq1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 42.0 3.21e-01 95.1% 79.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.77 52.0 4.12e-01 70.5% 39.2%
5052723 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 37.0 3.33e-01 100.0% 37.5%
3331569 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.72 43.0 4.57e-01 100.0% 67.3%
4997629 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.71 48.0 3.41e-01 70.5% 82.2%
4174140 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.70 41.0 3.75e-01 73.8% 45.0%
4945847 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.68 46.0 3.40e-01 70.5% 83.0%
4046039 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.67 43.0 3.78e-01 80.3% 45.9%
4025894 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 45.0 3.67e-01 100.0% 39.4%
4406935 4099.1.1.19 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM8 0.65 46.0 3.37e-01 75.4% 32.6%
1283866 220.1.1.51 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.63 45.0 3.47e-01 73.8% 48.4%
4389597 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 55.0 4.88e-01 100.0% 86.7%
4260038 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.63 43.0 3.43e-01 72.1% 56.2%
4969994 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.62 42.0 3.51e-01 70.5% 67.3%
5082550 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.62 42.0 3.45e-01 70.5% 64.3%
5024892 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.62 39.0 2.63e-01 77.0% 20.5%
6661 4276.1.1.1 a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.62 42.0 3.52e-01 70.5% 57.7%
3356611 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 42.0 4.39e-01 98.4% 80.0%
5013774 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.61 49.0 3.58e-01 90.2% 75.4%
3791485 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.60 52.0 3.49e-01 100.0% 34.5%
3447999 1.1.1.17 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.60 44.0 3.63e-01 82.0% 97.5%
4929046 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 49.0 3.46e-01 96.7% 76.4%
3841972 6043.1.1.4 a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.59 50.0 3.96e-01 100.0% 55.0%
3563240 387.1.1.55 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › TAFA 0.59 47.0 4.16e-01 86.9% 60.2%
3616581 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.59 52.0 3.29e-01 98.4% 30.2%
5006277 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 37.0 4.05e-01 88.5% 79.6%
3028388 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.59 44.0 4.17e-01 93.4% 68.1%
3509919 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.59 50.0 3.36e-01 98.4% 36.5%
3717071 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.59 50.0 3.18e-01 100.0% 20.8%
3792816 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.59 44.0 3.49e-01 91.8% 40.8%
4460376 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.58 48.0 3.89e-01 91.8% 84.2%
1082804 227.1.1.13 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.58 47.0 3.63e-01 91.8% 85.6%
4936049 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.58 50.0 4.06e-01 98.4% 86.7%
3756160 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.57 44.0 3.30e-01 91.8% 34.5%
3704674 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.56 47.0 3.00e-01 100.0% 46.1%
3627795 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.77e-01 88.5% 57.6%
4028407 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 45.0 3.63e-01 88.5% 62.5%
4028777 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 44.0 2.51e-01 85.2% 54.8%
3474880 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.55 38.0 3.36e-01 90.2% 48.9%
3923930 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 44.0 3.58e-01 93.4% 48.2%
3567079 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.54 45.0 3.07e-01 91.8% 26.8%
3828657 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 36.0 3.20e-01 70.5% 52.0%
4089210 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.54 40.0 3.71e-01 85.2% 85.9%
4942349 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 47.0 4.01e-01 100.0% 64.6%
3635644 319.1.1.14 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 0.53 46.0 3.83e-01 98.4% 65.5%
4954645 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.53 35.0 2.82e-01 96.7% 34.2%
5003472 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.53 44.0 3.38e-01 91.8% 91.1%
4029119 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.79e-01 95.1% 21.1%
5027507 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 42.0 2.75e-01 100.0% 41.1%
3471405 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.52 39.0 3.20e-01 86.9% 41.5%
4998173 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.52 41.0 3.82e-01 88.5% 68.0%
3793534 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.52 41.0 2.98e-01 100.0% 30.3%
3692631 319.1.1.14 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 0.51 45.0 3.71e-01 100.0% 92.7%
3244890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 44.0 3.49e-01 95.1% 74.2%
3992062 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 39.0 2.70e-01 90.2% 67.2%