←Back to structures
KP793113.1__ALM63641.1__PhiF17_28__00028
Bact-VirKP793113.1__ALM63641.1__PhiF17_28__00028
Identity
- Accession:
- KP793113 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
TaxID: 1636577
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-57
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kt2A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 43.0 | 3.96e-01 | 80.8% | 55.1% |
| 1w36B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 41.0 | 2.60e-01 | 71.2% | 12.7% |
| 2p3nA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.60 | 42.0 | 3.18e-01 | 75.0% | 81.5% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.60 | 43.0 | 3.91e-01 | 78.8% | 98.6% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.59 | 42.0 | 2.89e-01 | 78.8% | 22.9% |
| 2x7gA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 42.0 | 3.56e-01 | 78.8% | 48.9% |
| 8a6tB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 39.0 | 2.91e-01 | 73.1% | 45.0% |
| 2c43A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.56 | 38.0 | 2.78e-01 | 71.2% | 72.7% |
| 4k3cA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 40.0 | 3.56e-01 | 80.8% | 89.0% |
| 8fazD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 47.0 | 3.12e-01 | 98.1% | 66.7% |
| 3vrhA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 42.0 | 2.66e-01 | 84.6% | 34.6% |
| 6rxpA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.55 | 39.0 | 3.20e-01 | 75.0% | 68.4% |
| 7aqbB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 45.0 | 3.14e-01 | 100.0% | 84.9% |
| 1cfyA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 41.0 | 3.30e-01 | 96.2% | 91.7% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 36.0 | 2.87e-01 | 75.0% | 75.0% |
| 3d7tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 38.0 | 3.41e-01 | 80.8% | 75.3% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 41.0 | 3.17e-01 | 94.2% | 87.9% |
| 6kzdA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 43.0 | 3.08e-01 | 100.0% | 88.3% |
| 6ruiB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.52 | 43.0 | 3.35e-01 | 98.1% | 60.3% |
| 3pvtA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 41.0 | 2.56e-01 | 92.3% | 69.1% |
| 7uqyB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 37.0 | 2.51e-01 | 80.8% | 22.9% |
| 3w1yB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 40.0 | 3.35e-01 | 96.2% | 77.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1548765 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.67 | 48.0 | 3.89e-01 | 76.9% | 45.1% |
| 3666212 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.61 | 41.0 | 3.76e-01 | 80.8% | 51.4% |
| 3697768 | 872.4.1.0 ↗ | a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like | 0.61 | 44.0 | 4.64e-01 | 80.8% | 95.6% |
| 2791539 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.60 | 50.0 | 3.02e-01 | 100.0% | 67.8% |
| 5027955 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.58 | 42.0 | 4.18e-01 | 78.8% | 87.3% |
| 4978356 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.57 | 37.0 | 3.51e-01 | 80.8% | 50.0% |
| 3515089 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.57 | 41.0 | 3.83e-01 | 80.8% | 61.8% |
| 3497836 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 41.0 | 3.56e-01 | 82.7% | 47.8% |
| 3386584 | 3374.1.1.1 ↗ | a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG | 0.56 | 43.0 | 3.20e-01 | 84.6% | 77.9% |
| 3225455 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.56 | 40.0 | 3.83e-01 | 82.7% | 65.0% |
| 4634282 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.55 | 37.0 | 3.56e-01 | 80.8% | 58.7% |
| 4994972 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.55 | 36.0 | 3.39e-01 | 78.8% | 50.0% |
| 2028124 | 223.3.1.8 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.55 | 41.0 | 4.34e-01 | 82.7% | 97.7% |
| 4994964 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.55 | 46.0 | 2.96e-01 | 96.2% | 32.4% |
| 1095153 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 43.0 | 2.63e-01 | 94.2% | 48.5% |
| 2895887 | 206.1.1.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › HipA_C | 0.55 | 39.0 | 2.48e-01 | 80.8% | 34.5% |
| 4980882 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 42.0 | 3.69e-01 | 96.2% | 97.8% |
| 3268309 | 223.1.1.8 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE | 0.54 | 45.0 | 2.81e-01 | 96.2% | 51.8% |
| 3610727 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.53 | 43.0 | 2.54e-01 | 90.4% | 75.3% |
| 5000602 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.53 | 41.0 | 2.99e-01 | 86.5% | 92.9% |
| 3327738 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 46.0 | 3.11e-01 | 100.0% | 68.0% |
| 4878095 | 3374.1.1.1 ↗ | a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG | 0.53 | 37.0 | 3.12e-01 | 76.9% | 99.0% |
| 4025343 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 46.0 | 2.74e-01 | 100.0% | 50.0% |
| 4945499 | 2007.1.3.69 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Radical_SAM | 0.52 | 45.0 | 3.18e-01 | 100.0% | 51.8% |
| 3924659 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 43.0 | 2.73e-01 | 100.0% | 30.0% |
| 4061620 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.50 | 37.0 | 2.45e-01 | 80.8% | 22.6% |