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KP836356.2__AJW76984.1__UF09_18__00029
Bact-VirKP836356.2__AJW76984.1__UF09_18__00029
Identity
- Accession:
- KP836356 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-85_102-203
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ekeA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.71 | 58.0 | 6.10e-01 | 100.0% | 92.4% |
| 6xgzB01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.63 | 27.0 | 3.83e-01 | 83.9% | 82.2% |
| 4x9xA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.61 | 36.0 | 4.37e-01 | 99.5% | 89.9% |
| 5es8A03 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.58 | 22.0 | 3.49e-01 | 81.7% | 88.9% |
| 2bfdB02 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 34.0 | 4.05e-01 | 95.2% | 89.6% |
| 2lfrA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.55 | 20.0 | 2.65e-01 | 72.6% | 55.9% |
| 3fdjA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.55 | 35.0 | 4.09e-01 | 99.5% | 90.6% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.55 | 35.0 | 3.84e-01 | 94.1% | 76.3% |
| 3a3dA02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.54 | 30.0 | 3.88e-01 | 89.8% | 98.0% |
| 2ex2A02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.53 | 30.0 | 3.94e-01 | 89.2% | 99.0% |
| 2rbgA00 | 3.40.50.11100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 34.0 | 4.14e-01 | 100.0% | 96.8% |
| 6tr3A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 41.0 | 3.42e-01 | 81.7% | 89.1% |
| 3n4pC00 | 3.30.420.320 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › DNA-packaging terminase, C-terminal nuclease domain | 0.52 | 44.0 | 4.21e-01 | 100.0% | 77.1% |
| 7r8iA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 48.0 | 4.53e-01 | 100.0% | 95.9% |
| 1w5dA02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.51 | 29.0 | 3.73e-01 | 89.2% | 99.0% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 33.0 | 3.82e-01 | 87.1% | 89.6% |
| 1jceA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 36.0 | 3.96e-01 | 95.7% | 90.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3435087 | 2484.1.1.114 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C | 0.72 | 43.0 | 5.40e-01 | 88.7% | 96.5% |
| 3739670 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.62 | 32.0 | 3.97e-01 | 90.3% | 78.3% |
| 4428241 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.57 | 33.0 | 4.27e-01 | 97.3% | 98.2% |
| 5029946 | 2007.1.13.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase | 0.56 | 34.0 | 4.06e-01 | 94.1% | 89.6% |
| 4936069 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.55 | 28.0 | 3.92e-01 | 91.9% | 100.0% |
| 5036375 | 2007.6.1.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C | 0.55 | 33.0 | 3.52e-01 | 95.2% | 66.9% |
| 4943213 | 2007.6.1.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C | 0.53 | 33.0 | 3.30e-01 | 94.6% | 58.2% |
| 4996912 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.53 | 32.0 | 3.22e-01 | 100.0% | 56.4% |
| 4655849 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.53 | 33.0 | 3.28e-01 | 94.6% | 57.1% |
| 3405128 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.53 | 33.0 | 3.49e-01 | 94.1% | 69.1% |
| 5059861 | 2007.6.1.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C | 0.52 | 32.0 | 3.34e-01 | 96.8% | 64.9% |
| 4943452 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.51 | 36.0 | 3.99e-01 | 72.0% | 91.0% |
| 5051630 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.51 | 40.0 | 3.80e-01 | 81.7% | 91.4% |
| 4947054 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.51 | 32.0 | 3.17e-01 | 100.0% | 59.0% |
| 4946571 | 2008.1.1.85 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII | 0.50 | 38.0 | 3.70e-01 | 77.4% | 94.6% |
D2
medium
residues 86-101_204-269
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 52.0 | 3.80e-01 | 85.4% | 69.3% |
| 3jruA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 41.0 | 3.35e-01 | 84.1% | 87.1% |
| 3v3kD00 | 1.20.1260.90 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.51 | 43.0 | 3.60e-01 | 100.0% | 72.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1108085 | 109.4.1.58 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 | 0.66 | 52.0 | 3.21e-01 | 85.4% | 30.7% |
| 4015750 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.58 | 49.0 | 3.31e-01 | 97.6% | 57.1% |
| 3196570 | 7558.1.1.11 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C | 0.56 | 49.0 | 3.21e-01 | 100.0% | 62.6% |
| 3731484 | 7558.1.1.11 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C | 0.53 | 45.0 | 2.98e-01 | 96.3% | 53.8% |
| 3593175 | 2488.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot | 0.53 | 46.0 | 3.44e-01 | 100.0% | 84.4% |
| 3791570 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 43.0 | 2.99e-01 | 95.1% | 53.1% |
| 3538668 | 4244.1.1.5 ↗ | a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › TraB_PrgY_gumN | 0.52 | 40.0 | 2.88e-01 | 86.6% | 84.0% |
| 3410168 | 109.2.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans | 0.50 | 44.0 | 2.91e-01 | 100.0% | 48.9% |