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KP836356.2__AMS33995.1__UF09_53__00064
Bact-VirKP836356.2__AMS33995.1__UF09_53__00064
Identity
- Accession:
- KP836356 ↗
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-55
D2
medium
residues 56-140
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.86 | 48.0 | 6.26e-01 | 77.6% | 100.0% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.83 | 52.0 | 6.27e-01 | 96.5% | 98.2% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.81 | 49.0 | 5.91e-01 | 81.2% | 94.5% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 54.0 | 6.09e-01 | 74.1% | 89.4% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.78 | 72.0 | 5.71e-01 | 98.8% | 69.4% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.75 | 58.0 | 5.20e-01 | 82.4% | 98.3% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.74 | 63.0 | 6.34e-01 | 92.9% | 93.1% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.73 | 61.0 | 5.47e-01 | 90.6% | 65.5% |
| 3tu3B03 | 1.20.1050.100 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.72 | 56.0 | 4.42e-01 | 92.9% | 41.8% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.71 | 62.0 | 6.33e-01 | 98.8% | 98.8% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.69 | 50.0 | 5.23e-01 | 85.9% | 85.3% |
| 2oexA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.69 | 62.0 | 5.19e-01 | 100.0% | 86.0% |
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 57.0 | 4.84e-01 | 94.1% | 81.0% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.62 | 47.0 | 5.01e-01 | 87.1% | 98.6% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 45.0 | 4.03e-01 | 80.0% | 86.3% |
| 1n5uA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.60 | 49.0 | 4.89e-01 | 95.3% | 85.6% |
| 3f7cA00 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.60 | 51.0 | 3.92e-01 | 96.5% | 40.7% |
| 4m7cB00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.60 | 51.0 | 3.95e-01 | 96.5% | 58.6% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.59 | 42.0 | 3.36e-01 | 72.9% | 64.3% |
| 3rauA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.59 | 51.0 | 3.44e-01 | 100.0% | 97.5% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 44.0 | 4.56e-01 | 94.1% | 93.8% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 41.0 | 4.03e-01 | 81.2% | 78.7% |
| 3usyA01 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.53 | 44.0 | 4.24e-01 | 90.6% | 99.0% |
| 2vlaA03 | 1.10.10.2090 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 34.0 | 3.05e-01 | 82.4% | 45.0% |
| 3caoA00 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.53 | 42.0 | 4.01e-01 | 88.2% | 89.2% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.51 | 38.0 | 3.80e-01 | 77.6% | 77.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3385184 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.94 | 70.0 | 8.02e-01 | 91.8% | 100.0% |
| 3491715 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.84 | 67.0 | 6.94e-01 | 94.1% | 90.0% |
| 4034213 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.83 | 66.0 | 6.80e-01 | 83.5% | 95.0% |
| 5053994 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.83 | 68.0 | 7.24e-01 | 98.8% | 100.0% |
| 3394510 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.81 | 66.0 | 6.77e-01 | 100.0% | 91.3% |
| 3875853 | 109.3.1.164 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 | 0.81 | 61.0 | 4.23e-01 | 96.5% | 25.8% |
| 4640125 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.81 | 51.0 | 6.25e-01 | 77.6% | 100.0% |
| 5005635 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 50.0 | 5.99e-01 | 77.6% | 96.4% |
| 4026213 | 632.3.1.10 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › ACDC | 0.80 | 62.0 | 6.01e-01 | 94.1% | 73.7% |
| 3573674 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.79 | 64.0 | 6.57e-01 | 92.9% | 90.0% |
| 5044962 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.79 | 68.0 | 6.60e-01 | 100.0% | 83.2% |
| 5006607 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.78 | 72.0 | 7.22e-01 | 97.6% | 100.0% |
| 3587779 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.77 | 56.0 | 5.81e-01 | 96.5% | 81.2% |
| 4990419 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.77 | 72.0 | 5.71e-01 | 100.0% | 69.4% |
| 5035899 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.77 | 72.0 | 5.69e-01 | 100.0% | 67.5% |
| 3235853 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.77 | 65.0 | 6.69e-01 | 97.6% | 97.5% |
| 4051716 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.77 | 60.0 | 4.26e-01 | 100.0% | 28.5% |
| 4986966 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.76 | 71.0 | 5.69e-01 | 100.0% | 71.6% |
| 4029232 | 616.1.1.20 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › ACDC | 0.75 | 59.0 | 5.52e-01 | 91.8% | 68.6% |
| 4857416 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.74 | 68.0 | 4.58e-01 | 98.8% | 49.8% |
| 4681325 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.74 | 64.0 | 6.60e-01 | 98.8% | 100.0% |
| 4591721 | 2004.1.1.189 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 | 0.73 | 56.0 | 3.89e-01 | 81.2% | 38.1% |
| 4240705 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.73 | 65.0 | 6.50e-01 | 100.0% | 97.6% |
| 4426245 | 602.2.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › RNA-binding protein She2p › RNA-binding protein She2p › She2p | 0.73 | 62.0 | 4.58e-01 | 95.3% | 91.7% |
| 1180303 | 632.19.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › RICH | 0.72 | 63.0 | 6.47e-01 | 97.6% | 100.0% |
| 4033040 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.70 | 53.0 | 5.45e-01 | 81.2% | 92.5% |
| 5058934 | 2004.1.1.1221 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27431 | 0.70 | 59.0 | 3.91e-01 | 90.6% | 39.7% |
| 5046377 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.69 | 61.0 | 5.88e-01 | 95.3% | 92.6% |
| 3967307 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.59 | 51.0 | 4.52e-01 | 98.8% | 76.9% |
| 3716683 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.58 | 48.0 | 4.22e-01 | 95.3% | 58.5% |
| 5063748 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.58 | 53.0 | 5.15e-01 | 98.8% | 92.6% |
| 4954654 | 101.1.2.99 ↗ | alpha arrays › HTH › HTH › winged helix domain › BrxA | 0.54 | 37.0 | 3.36e-01 | 71.8% | 77.5% |
| 3732935 | 109.2.1.39 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Ldi | 0.52 | 45.0 | 2.86e-01 | 95.3% | 78.1% |