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KP836356.2__AMS34001.1__UF09_59__00070

Bact-Vir

KP836356.2__AMS34001.1__UF09_59__00070

Identity

Accession:
KP836356 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Marinitoga_camini_virus_2

TaxID: 1629953

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-81
PDB
Domain cluster: rep: IMGVR_UViG_3300021256_004082-3300021256-Ga0223826_1000019029__D28-87
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11950.14 best DUF3467 45.4 9.30e-12 100.0% 62.0%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.73 63.0 4.64e-01 96.6% 48.1%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 54.0 3.96e-01 88.1% 58.4%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 60.0 4.46e-01 100.0% 53.3%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 54.0 3.22e-01 91.5% 42.5%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 4.05e-01 100.0% 44.5%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 48.0 3.79e-01 81.4% 68.3%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.64 44.0 3.28e-01 72.9% 53.8%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.63 43.0 3.56e-01 72.9% 43.5%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 3.68e-01 81.4% 73.0%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 50.0 3.59e-01 100.0% 77.9%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 50.0 3.09e-01 100.0% 57.9%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.06e-01 98.3% 48.0%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.38e-01 100.0% 47.3%
1shsA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.13e-01 71.2% 83.5%
3qcpA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 51.0 3.66e-01 100.0% 66.7%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.57 40.0 3.34e-01 88.1% 38.3%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 48.0 3.73e-01 100.0% 78.0%
7tuvA02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.85e-01 88.1% 100.0%
7x4oB01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 49.0 3.98e-01 100.0% 53.2%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.54 33.0 3.10e-01 76.3% 46.6%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.40e-01 96.6% 45.0%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 43.0 2.72e-01 86.4% 45.2%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.52e-01 96.6% 52.7%
2w40A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 46.0 3.06e-01 98.3% 36.8%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.53 35.0 3.02e-01 71.2% 41.2%
4pmwA02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.43e-01 72.9% 97.4%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.62e-01 93.2% 54.8%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 42.0 2.95e-01 86.4% 32.2%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.52 43.0 3.30e-01 100.0% 78.9%
1gsaA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.51e-01 100.0% 73.4%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 42.0 3.23e-01 91.5% 54.6%
1nvpD02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.51 36.0 4.05e-01 83.1% 93.5%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.68e-01 100.0% 37.4%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 43.0 3.66e-01 96.6% 89.9%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.09e-01 93.2% 38.5%
1f3lA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.50 36.0 2.76e-01 81.4% 95.3%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 40.0 3.28e-01 89.8% 76.3%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952012 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.84 39.0 2.36e-01 88.1% 8.9%
4541933 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.81 37.0 2.60e-01 86.4% 16.2%
4400500 223.1.1.132 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, sCache_3_2 0.80 39.0 2.38e-01 88.1% 9.8%
3944524 295.1.1.26 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › BssS 0.77 66.0 6.20e-01 91.5% 80.0%
4029022 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.74 54.0 3.79e-01 78.0% 80.0%
4070525 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.71 57.0 4.52e-01 88.1% 83.3%
4351646 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.71 45.0 3.05e-01 100.0% 20.5%
5079140 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 56.0 4.68e-01 93.2% 82.5%
3937937 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.67 49.0 3.89e-01 79.7% 82.4%
4041632 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 55.0 4.25e-01 100.0% 67.6%
3649488 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.65 49.0 3.66e-01 83.1% 81.9%
3798258 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.64 53.0 3.04e-01 91.5% 58.2%
3276021 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.64 58.0 3.34e-01 100.0% 38.7%
3233763 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 47.0 3.80e-01 79.7% 67.8%
3607858 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 46.0 3.79e-01 76.3% 43.8%
3421076 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.62 54.0 3.46e-01 100.0% 30.5%
3520126 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.62 53.0 3.31e-01 100.0% 27.8%
3931229 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 51.0 3.13e-01 94.9% 21.8%
3231135 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 3.92e-01 93.2% 46.4%
5049059 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.30e-01 81.4% 33.3%
3708818 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 43.0 3.47e-01 96.6% 39.1%
3520566 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 54.0 3.82e-01 100.0% 36.6%
3457175 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 53.0 3.45e-01 100.0% 33.5%
3939751 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 50.0 3.02e-01 94.9% 18.6%
3772065 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.59 49.0 4.07e-01 100.0% 49.6%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 51.0 4.58e-01 100.0% 69.4%
3242923 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 45.0 3.47e-01 81.4% 90.8%
3460207 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 48.0 3.23e-01 100.0% 60.4%
3940203 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.58 47.0 4.03e-01 91.5% 59.0%
3762105 11.1.1.1118 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28312 0.58 47.0 3.70e-01 93.2% 76.3%
3635930 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 40.0 2.93e-01 72.9% 29.0%
3535499 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 4.07e-01 100.0% 51.8%
4002771 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.78e-01 96.6% 43.0%
None — 0.58 50.0 2.98e-01 100.0% 24.3%
3338071 2484.1.1.215 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.57 50.0 3.64e-01 100.0% 52.7%
4927056 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.57 42.0 3.12e-01 78.0% 31.0%
3849982 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.57 43.0 2.58e-01 100.0% 10.3%
3597697 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.57 48.0 3.43e-01 100.0% 64.5%
3696734 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 49.0 3.27e-01 100.0% 67.3%
3886674 868.1.1.5 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.56 43.0 3.10e-01 89.8% 26.9%
5027780 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.56 37.0 3.72e-01 81.4% 66.7%
3683603 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 49.0 2.90e-01 100.0% 18.6%
3483121 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.97e-01 88.1% 88.2%
4824429 2.1.1.86 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 0.55 40.0 3.57e-01 79.7% 51.6%
3487225 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.53e-01 100.0% 40.0%
4564292 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 46.0 3.83e-01 100.0% 72.2%
3825307 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.51e-01 96.6% 18.8%
3233381 5.1.4.47 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.55 41.0 2.65e-01 93.2% 15.0%
3705073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.61e-01 86.4% 84.0%
3270895 304.107.1.5 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.55 41.0 3.44e-01 86.4% 99.1%
4955365 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.54 37.0 2.87e-01 72.9% 31.9%
5065450 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.01e-01 81.4% 31.0%
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.54 44.0 4.03e-01 94.9% 85.0%
3199439 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.20e-01 96.6% 34.2%
3783691 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.53 42.0 3.05e-01 94.9% 79.5%
4098000 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 47.0 3.78e-01 100.0% 61.7%
4010765 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 44.0 3.62e-01 100.0% 69.6%
3376563 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.53 41.0 3.13e-01 93.2% 34.0%
3737229 2.1.1.86 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 0.53 41.0 3.51e-01 91.5% 96.4%
3680932 220.1.1.180 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7642 0.53 46.0 3.77e-01 100.0% 57.4%
3460976 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.53 43.0 2.81e-01 100.0% 46.6%
4200618 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 44.0 3.67e-01 100.0% 73.0%
4397552 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 43.0 3.55e-01 100.0% 66.4%
5046724 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 44.0 3.66e-01 100.0% 73.0%
3565994 5.1.4.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nbas_N 0.52 43.0 2.62e-01 100.0% 45.5%
3636447 2484.1.1.39 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.52 44.0 2.66e-01 93.2% 13.6%
3525336 5.1.3.130 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HPS3_N 0.52 40.0 2.92e-01 93.2% 58.6%
3315568 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 44.0 4.11e-01 91.5% 75.7%
4460236 2484.1.1.232 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › EutA 0.52 42.0 3.19e-01 94.9% 67.7%
3822963 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 39.0 3.22e-01 88.1% 76.9%
4144742 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 42.0 3.52e-01 100.0% 65.0%
3808055 244.1.1.29 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › AAA_assoc 0.51 38.0 3.16e-01 84.7% 98.3%
3968468 4152.2.1.0 ↗ a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.51 39.0 3.66e-01 86.4% 74.7%
4103800 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.50 42.0 3.47e-01 100.0% 71.7%
3470080 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 43.0 3.87e-01 93.2% 69.6%
3967619 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.50 43.0 3.48e-01 100.0% 56.7%