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KP861230.1__AJT61358.1__ABA3177_00420__00042

Bact-Vir

KP861230.1__AJT61358.1__ABA3177_00420__00042

Identity

Accession:
KP861230 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vieuvirus› Acinetobacter_phage_YMC11/11/R3177

TaxID: 1628721

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
Domain cluster: rep: LC739539.1__BDU13626.1__X__00016__D6-50
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.86 62.0 6.13e-01 75.8% 92.4%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 60.0 6.01e-01 77.4% 96.9%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.79 60.0 5.62e-01 82.3% 88.3%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 59.0 5.10e-01 79.0% 84.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 59.0 5.58e-01 79.0% 74.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 54.0 5.72e-01 74.2% 83.9%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 56.0 5.34e-01 77.4% 87.5%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.76 54.0 5.85e-01 77.4% 94.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 53.0 5.62e-01 77.4% 90.7%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.71 64.0 3.79e-01 100.0% 26.9%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.70 52.0 4.08e-01 80.6% 60.6%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 50.0 3.99e-01 75.8% 94.4%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 4.73e-01 80.6% 66.3%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 50.0 3.99e-01 75.8% 95.9%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.70 47.0 4.56e-01 71.0% 78.9%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 52.0 3.85e-01 82.3% 53.6%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.68 49.0 3.57e-01 77.4% 29.9%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 50.0 3.09e-01 82.3% 41.7%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 49.0 3.07e-01 83.9% 62.8%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.72e-01 75.8% 93.1%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 47.0 3.28e-01 79.0% 73.9%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 49.0 3.81e-01 85.5% 69.6%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.64 44.0 3.23e-01 72.6% 58.5%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.64 44.0 3.01e-01 74.2% 32.4%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 3.32e-01 71.0% 79.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 48.0 4.71e-01 82.3% 83.3%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.62 43.0 3.88e-01 75.8% 72.0%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.61 46.0 3.62e-01 82.3% 75.9%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.35e-01 77.4% 90.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 40.0 4.13e-01 71.0% 81.0%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.59 43.0 3.19e-01 77.4% 37.0%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.58 42.0 3.79e-01 77.4% 87.6%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 40.0 3.29e-01 74.2% 86.6%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 3.16e-01 80.6% 72.1%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 38.0 2.98e-01 74.2% 77.9%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 39.0 3.29e-01 75.8% 74.6%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 45.0 3.27e-01 95.2% 88.2%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 37.0 3.62e-01 71.0% 71.0%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 41.0 3.45e-01 82.3% 64.8%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 3.16e-01 88.7% 80.9%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 37.0 2.36e-01 75.8% 61.7%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 35.0 2.31e-01 71.0% 41.4%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.52 38.0 2.97e-01 82.3% 78.3%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.14e-01 71.0% 57.6%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.51 36.0 3.08e-01 79.0% 59.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.93 66.0 7.04e-01 74.2% 89.1%
3210707 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.87 62.0 6.31e-01 74.2% 100.0%
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 61.0 6.50e-01 74.2% 90.9%
157526 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.86 60.0 6.00e-01 72.6% 93.7%
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.86 63.0 5.90e-01 77.4% 82.7%
3480200 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.85 60.0 5.65e-01 74.2% 97.3%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.84 59.0 6.05e-01 74.2% 88.3%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 63.0 6.53e-01 80.6% 96.6%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 60.0 5.36e-01 77.4% 85.9%
3991896 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.82 61.0 5.24e-01 79.0% 68.4%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.82 59.0 4.49e-01 75.8% 41.5%
3583296 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.80 61.0 5.86e-01 80.6% 94.3%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 63.0 5.52e-01 83.9% 80.0%
3181766 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.80 62.0 5.80e-01 82.3% 69.3%
3279614 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.78 58.0 4.27e-01 79.0% 36.1%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 57.0 3.79e-01 79.0% 40.0%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 3.87e-01 82.3% 38.6%
4932493 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.55e-01 80.6% 81.5%
3296865 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 60.0 4.94e-01 87.1% 88.6%
3192398 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.73 66.0 3.84e-01 100.0% 23.9%
3638713 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.72 65.0 3.82e-01 100.0% 24.4%
1778160 109.1.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.72 52.0 3.44e-01 75.8% 22.5%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 53.0 4.91e-01 80.6% 72.5%
4026408 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.71 54.0 4.63e-01 82.3% 58.0%
3989574 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 4.48e-01 74.2% 62.4%
4311691 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 47.0 3.70e-01 71.0% 40.0%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 47.0 4.56e-01 71.0% 72.9%
3975862 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.68 48.0 4.43e-01 74.2% 93.8%
3973076 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.67 48.0 3.25e-01 75.8% 22.6%
1144799 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 50.0 3.70e-01 80.6% 99.4%
5033213 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 46.0 3.70e-01 72.6% 40.0%
3837575 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.66 56.0 3.50e-01 96.8% 91.5%
4049072 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.64 44.0 3.67e-01 71.0% 47.3%
3736175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.18e-01 75.8% 61.2%
138326 101.1.8.2 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.62 44.0 3.46e-01 75.8% 58.3%
4497740 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.62 42.0 4.26e-01 71.0% 76.7%
3165403 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.61 41.0 4.10e-01 71.0% 72.3%
4107506 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 41.0 4.09e-01 71.0% 72.3%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 45.0 4.27e-01 82.3% 97.3%
3484000 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 2.79e-01 96.8% 30.6%
4435672 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 40.0 3.96e-01 71.0% 72.3%
4068978 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 39.0 3.76e-01 71.0% 62.7%
4127839 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 39.0 3.76e-01 71.0% 62.7%
4159666 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 39.0 3.38e-01 72.6% 43.1%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.57 40.0 3.80e-01 77.4% 81.2%
3728061 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.56 39.0 3.12e-01 74.2% 81.2%
3825341 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 41.0 3.47e-01 79.0% 85.7%
3193266 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.55 41.0 3.24e-01 83.9% 66.9%
5013584 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 38.0 3.64e-01 72.6% 81.4%
3164555 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 41.0 3.18e-01 83.9% 61.3%
309454 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 39.0 3.11e-01 77.4% 81.8%
3743202 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.53 37.0 3.11e-01 77.4% 88.3%
4017127 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 3.02e-01 100.0% 86.8%
4024730 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 35.0 3.24e-01 71.0% 70.6%