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KP861231.1__AJT61457.1__ABA1215_00610__00061

Bact-Vir

KP861231.1__AJT61457.1__ABA1215_00610__00061

Identity

Accession:
KP861231 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Obolenskvirus› Acinetobacter_phage_YMC11/12/R1215

TaxID: 1628722

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-107
PDB
Domain cluster: rep: NC_048189.1__YP_009822937.1__HOV46_gp060__00060__D58-143
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.73 62.0 5.58e-01 91.9% 93.2%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.65 37.0 4.32e-01 95.3% 78.1%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 53.0 4.57e-01 96.5% 77.2%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.62 43.0 3.58e-01 73.3% 74.7%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 44.0 2.91e-01 90.7% 17.3%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 38.0 3.82e-01 98.8% 67.1%
1xd4A04 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.57 41.0 3.09e-01 75.6% 77.1%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.56 49.0 3.53e-01 100.0% 45.9%
5u1aL00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 50.0 3.97e-01 97.7% 61.4%
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.60e-01 96.5% 59.0%
4od4A01 1.10.357.140 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase 0.54 45.0 3.79e-01 95.3% 92.3%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.85e-01 70.9% 78.9%
4c9bB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 42.0 3.02e-01 87.2% 69.0%
2vf7B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 2.83e-01 83.7% 39.0%
1qu7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.54 39.0 2.83e-01 97.7% 28.6%
6vvoC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.53 42.0 4.16e-01 86.0% 85.7%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 42.0 3.91e-01 84.9% 92.7%
1txuA02 1.20.1050.80 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain 0.53 40.0 3.30e-01 80.2% 48.8%
3zwbA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.52 44.0 3.15e-01 95.3% 51.6%
2ctqA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.52 44.0 4.31e-01 94.2% 100.0%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.52 47.0 3.86e-01 100.0% 73.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3247410 3324.1.1.2 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.80 35.0 3.12e-01 81.4% 31.7%
4437630 3705.1.1.0 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) 0.67 48.0 5.25e-01 74.4% 97.1%
3225250 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.67 52.0 5.51e-01 83.7% 97.3%
5035650 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.67 48.0 5.24e-01 74.4% 100.0%
3822661 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.64 55.0 4.43e-01 100.0% 74.1%
5048198 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.64 46.0 4.82e-01 75.6% 93.3%
3234027 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.64 42.0 4.78e-01 84.9% 98.3%
4381449 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 4.73e-01 75.6% 100.0%
3452310 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.62 51.0 4.14e-01 95.3% 75.0%
3385476 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.60 53.0 3.20e-01 100.0% 27.8%
3788539 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 43.0 2.82e-01 75.6% 31.0%
5019360 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.58 50.0 3.50e-01 95.3% 32.1%
3178973 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.57 42.0 3.73e-01 79.1% 55.2%