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KP876465.1__AKA61705.1__SEA_YDN12_38__00037
Bact-VirKP876465.1__AKA61705.1__SEA_YDN12_38__00037
Identity
- Accession:
- KP876465 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Taxonomy
TaxID: 1636183
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-132
Domain cluster:
rep: KU935731.1__AMS02272.1__SEA_PHRANN_46__00046__D109-215
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02467.22 best | Whib | 57.6 | 2.10e-15 | 51.0% | 75.4% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3awmA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 53.0 | 3.55e-01 | 95.2% | 66.6% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.60 | 35.0 | 3.61e-01 | 86.5% | 59.0% |
| 1pu6A01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.60 | 34.0 | 3.55e-01 | 90.4% | 58.5% |
| 3abbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 52.0 | 3.52e-01 | 95.2% | 63.7% |
| 1bgpA01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.60 | 42.0 | 3.68e-01 | 74.0% | 53.4% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.59 | 39.0 | 3.59e-01 | 87.5% | 51.1% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.58 | 36.0 | 3.95e-01 | 95.2% | 79.7% |
| 8sfuA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.56 | 41.0 | 3.59e-01 | 76.0% | 95.5% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.56 | 36.0 | 3.70e-01 | 93.3% | 67.3% |
| 2kbwA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.56 | 42.0 | 3.72e-01 | 78.8% | 93.5% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.56 | 33.0 | 3.08e-01 | 94.2% | 48.0% |
| 3b9wA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.56 | 39.0 | 2.73e-01 | 73.1% | 30.4% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 28.0 | 2.98e-01 | 95.2% | 51.1% |
| 6wh0A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.55 | 38.0 | 3.44e-01 | 72.1% | 96.1% |
| 7akwA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 42.0 | 3.35e-01 | 100.0% | 40.1% |
| 1sdiA00 | 1.10.3890.10 | Mainly Alpha › Orthogonal Bundle › YcfC-like › HflD-like | 0.52 | 40.0 | 3.26e-01 | 88.5% | 40.8% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 39.0 | 3.50e-01 | 80.8% | 84.8% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 40.0 | 3.32e-01 | 86.5% | 61.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954362 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.65 | 54.0 | 5.31e-01 | 88.5% | 90.9% |
| 3743879 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.62 | 33.0 | 3.51e-01 | 96.2% | 55.8% |
| 3299574 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 32.0 | 3.40e-01 | 86.5% | 54.7% |
| 4026107 | 4207.1.2.47 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › RIFIN | 0.60 | 45.0 | 3.60e-01 | 78.8% | 46.8% |
| 5053755 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.58 | 43.0 | 3.95e-01 | 79.8% | 91.4% |
| 4678853 | 185.1.2.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Protein HNS-dependent expression A HdeA › HdeA | 0.57 | 34.0 | 3.81e-01 | 89.4% | 79.7% |
| 3926547 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.57 | 45.0 | 4.17e-01 | 88.5% | 100.0% |
| 3975800 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.56 | 45.0 | 3.29e-01 | 89.4% | 63.7% |
| 5070596 | 7566.1.1.2 ↗ | a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N | 0.56 | 40.0 | 3.31e-01 | 100.0% | 41.6% |
| 4936733 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 32.0 | 3.12e-01 | 99.0% | 47.5% |
| 5039845 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.55 | 34.0 | 3.35e-01 | 89.4% | 54.8% |
| 3959593 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 38.0 | 3.33e-01 | 72.1% | 76.9% |
| 4360066 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.52 | 28.0 | 2.65e-01 | 87.5% | 40.8% |
| 3990094 | 5086.1.1.94 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD | 0.52 | 38.0 | 3.30e-01 | 93.3% | 47.6% |
| 3802520 | 101.1.1.476 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › POX | 0.51 | 30.0 | 3.09e-01 | 93.3% | 60.0% |
| 3511335 | 551.1.1.0 ↗ | alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain | 0.51 | 45.0 | 4.27e-01 | 100.0% | 92.0% |
| 4010800 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.50 | 43.0 | 2.90e-01 | 99.0% | 28.0% |