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KP881232.1__AKE44662.1__Sm_phiM9_032__00031

Bact-Vir

KP881232.1__AKE44662.1__Sm_phiM9_032__00031

Identity

Accession:
KP881232 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Emnonavirus› Sinorhizobium_phage_phiM9

TaxID: 1636182

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-138_177-201
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.75 55.0 6.01e-01 75.7% 100.0%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 43.0 4.78e-01 73.9% 85.4%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 3.49e-01 99.1% 62.1%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 3.57e-01 100.0% 70.4%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.48e-01 100.0% 68.4%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.40e-01 100.0% 67.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4344289 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.78 58.0 5.57e-01 77.4% 73.8%
5074648 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 40.0 4.85e-01 78.3% 89.3%
4996552 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 40.0 4.57e-01 78.3% 80.0%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 39.0 4.72e-01 77.4% 89.3%
4515517 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.66 45.0 5.04e-01 76.5% 90.0%
4013514 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.66 39.0 4.13e-01 78.3% 64.8%
3345090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 39.0 4.01e-01 78.3% 62.0%
2527501 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 39.0 4.07e-01 78.3% 64.4%
5030993 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 39.0 4.52e-01 78.3% 85.0%
4977317 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.65 44.0 4.37e-01 73.9% 66.4%
4945828 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 46.0 5.12e-01 77.4% 93.3%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 38.0 4.09e-01 78.3% 66.3%
2106285 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 38.0 3.94e-01 78.3% 62.0%
4170310 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.64 43.0 4.81e-01 73.9% 88.9%
2968539 3868.1.1.1 ↗ a+b three layers › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mhr1 0.64 45.0 3.79e-01 72.2% 63.4%
3588392 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.62 45.0 4.79e-01 77.4% 87.0%
4991788 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.16e-01 100.0% 56.2%