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KP881232.1__AKE44681.1__Sm_phiM9_051__00050

Bact-Vir

KP881232.1__AKE44681.1__Sm_phiM9_051__00050

Identity

Accession:
KP881232 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Emnonavirus› Sinorhizobium_phage_phiM9

TaxID: 1636182

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-106
PDB
Domain cluster: rep: MH517022.1__AXF41541.1__SHAb15599_00190__00170__D10-84
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12322.15 best T4_baseplate 72.2 7.30e-20 100.0% 42.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 43.0 3.11e-01 84.5% 31.8%
2yjgA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.55 41.0 3.19e-01 81.4% 51.5%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 35.0 3.24e-01 70.1% 82.9%
4p32B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 3.07e-01 84.5% 67.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051872 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.58 42.0 3.99e-01 78.4% 94.2%
3707811 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 49.0 3.31e-01 95.9% 76.5%
4019993 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.56 47.0 3.47e-01 92.8% 74.1%
3724091 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.55 47.0 3.50e-01 93.8% 65.5%
4985569 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.55 41.0 3.69e-01 78.4% 83.0%
5019573 5001.1.1.292 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM 0.54 40.0 3.08e-01 78.4% 84.3%
3619358 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.54 42.0 2.89e-01 84.5% 69.6%
3632684 101.1.21.0 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.54 45.0 2.95e-01 94.8% 39.2%
3737595 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.53 39.0 2.87e-01 76.3% 34.5%
3409160 109.4.1.71 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD_C,IFRD 0.53 40.0 2.68e-01 82.5% 56.0%
5021128 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.52 39.0 3.65e-01 80.4% 97.6%
3968565 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.52 34.0 3.29e-01 80.4% 57.8%
147013 3227.1.1.1 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.52 44.0 2.92e-01 95.9% 82.6%
3455661 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.52 40.0 2.55e-01 81.4% 21.1%
3177409 330.1.1.13 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Mgm101p 0.52 37.0 3.15e-01 75.3% 77.6%
3588211 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.52 38.0 2.95e-01 78.4% 61.7%
3828164 109.4.1.1335 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.52 41.0 2.67e-01 84.5% 22.0%
4384717 140.1.1.8 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 0.52 45.0 3.47e-01 97.9% 71.6%
2987353 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.51 43.0 3.24e-01 93.8% 59.7%
5020501 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.51 43.0 3.87e-01 95.9% 92.4%
3274079 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 40.0 2.83e-01 84.5% 35.9%
4959470 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.51 38.0 3.55e-01 78.4% 96.7%
3276125 109.4.1.75 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD 0.51 40.0 2.69e-01 84.5% 28.0%
3365774 109.4.1.1560 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, E_motif 0.51 39.0 2.65e-01 81.4% 27.0%
3599395 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 41.0 2.83e-01 92.8% 91.8%
3486431 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.50 38.0 2.80e-01 99.0% 26.3%
3690788 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.50 41.0 3.14e-01 95.9% 66.3%
D2 high residues 116-199
PDB
Domain cluster: rep: NC_048765.1__YP_009845671.1__HWC21_gp015__00015__D138-217
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12322.15 best T4_baseplate 35.4 1.30e-08 100.0% 31.5%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.87e-01 85.7% 81.2%
7vhqU01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.55 38.0 3.57e-01 73.8% 75.5%
2xf4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 32.0 2.45e-01 97.6% 22.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 32.0 3.47e-01 86.9% 75.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 31.0 3.56e-01 88.1% 98.1%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.50 38.0 3.43e-01 89.3% 58.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3386115 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.59 39.0 4.41e-01 77.4% 95.0%
3483010 1129.1.1.1 ↗ a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 0.57 43.0 4.16e-01 100.0% 71.6%
4649099 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.56 39.0 3.32e-01 73.8% 55.3%
140035 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.55 32.0 2.45e-01 97.6% 22.9%
2772527 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.53 31.0 3.13e-01 98.8% 55.4%
3227676 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.53 37.0 3.12e-01 73.8% 51.9%
3790199 64.5.1.0 ↗ beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB 0.51 34.0 3.86e-01 91.7% 96.7%
4942485 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.50 31.0 3.20e-01 88.1% 63.7%