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KP881232.1__AKE44687.1__Sm_phiM9_057__00056

Bact-Vir

KP881232.1__AKE44687.1__Sm_phiM9_057__00056

Identity

Accession:
KP881232 ↗
Kingdom:
phage

Quality

67.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Emnonavirus› Sinorhizobium_phage_phiM9

TaxID: 1636182

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-105
PDB
Domain cluster: rep: KY499642.1__AQT28023.1__pVa21_082__00082__D3-66
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.28e-01 74.4% 84.4%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 5.17e-01 70.0% 90.5%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 5.36e-01 71.1% 95.2%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 45.0 5.10e-01 75.6% 86.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 5.12e-01 71.1% 90.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.20e-01 72.2% 93.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.89e-01 70.0% 89.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.79e-01 71.1% 89.2%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 45.0 4.71e-01 70.0% 81.5%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.14e-01 75.6% 57.9%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.65 44.0 4.48e-01 71.1% 88.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 43.0 4.68e-01 71.1% 84.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 55.0 4.73e-01 95.6% 93.8%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.95e-01 75.6% 95.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 3.86e-01 76.7% 47.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 44.0 4.84e-01 82.2% 98.5%
2xgjA05 2.40.30.300 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 52.0 4.54e-01 92.2% 84.6%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 5.06e-01 95.6% 97.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.22e-01 73.3% 83.1%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 37.0 2.70e-01 71.1% 50.6%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 39.0 2.56e-01 76.7% 52.4%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 2.50e-01 74.4% 40.0%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 36.0 2.72e-01 71.1% 59.8%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 42.0 3.43e-01 92.2% 96.8%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 3.31e-01 72.2% 91.7%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 2.69e-01 74.4% 66.4%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 2.43e-01 76.7% 52.0%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 47.0 5.30e-01 75.6% 80.0%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 55.0 5.63e-01 75.6% 84.7%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 45.0 5.65e-01 71.1% 100.0%
4029093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 45.0 3.70e-01 70.0% 35.5%
3558774 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.73 46.0 5.49e-01 71.1% 95.0%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.72 43.0 5.14e-01 71.1% 90.0%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.72 47.0 5.61e-01 72.2% 100.0%
3766659 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 47.0 5.55e-01 72.2% 100.0%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.70e-01 73.3% 100.0%
3924975 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.70 49.0 5.19e-01 72.2% 81.2%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 47.0 5.44e-01 73.3% 95.4%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.59e-01 77.8% 98.5%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 5.17e-01 76.7% 87.1%
5069062 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.69 44.0 5.34e-01 80.0% 100.0%
3922903 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.69 45.0 5.37e-01 72.2% 100.0%
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 5.23e-01 74.4% 96.7%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 5.06e-01 74.4% 90.8%
4220608 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.69 43.0 4.66e-01 71.1% 76.0%
3476336 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.68 47.0 5.30e-01 71.1% 100.0%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.84e-01 71.1% 90.6%
3570368 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 49.0 4.72e-01 81.1% 67.0%
4227222 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.68 46.0 5.09e-01 73.3% 88.6%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.67 50.0 4.70e-01 78.9% 75.5%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.67 50.0 4.70e-01 78.9% 75.5%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.67 57.0 5.91e-01 97.8% 98.8%
4565837 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.67 47.0 4.61e-01 76.7% 68.4%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.67 53.0 4.39e-01 84.4% 73.5%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 5.17e-01 71.1% 98.4%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 5.19e-01 73.3% 98.6%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.66 47.0 3.84e-01 73.3% 55.5%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 57.0 5.67e-01 97.8% 90.5%
3905549 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 49.0 4.66e-01 87.8% 66.7%
3940730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.88e-01 84.4% 74.7%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.76e-01 81.1% 77.6%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 46.0 4.63e-01 84.4% 73.3%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.90e-01 72.2% 94.7%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 54.0 5.41e-01 95.6% 90.0%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 45.0 4.85e-01 75.6% 85.3%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.65 45.0 4.89e-01 76.7% 86.7%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.64 49.0 5.30e-01 83.3% 96.0%
4956630 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.64 47.0 3.92e-01 78.9% 44.5%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 5.15e-01 80.0% 94.6%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 55.0 5.36e-01 100.0% 85.0%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.82e-01 81.1% 75.8%
3589934 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.64 49.0 4.00e-01 82.2% 50.3%
3482360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.44e-01 71.1% 88.9%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 57.0 5.55e-01 100.0% 94.0%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 47.0 4.75e-01 84.4% 77.8%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 5.64e-01 100.0% 97.8%
3740221 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 45.0 3.74e-01 75.6% 57.5%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.63 45.0 4.58e-01 75.6% 81.1%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 44.0 4.77e-01 80.0% 89.3%
3344303 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.62 53.0 5.10e-01 91.1% 91.0%
3812261 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 52.0 4.82e-01 90.0% 91.3%
4587696 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.62 39.0 3.75e-01 71.1% 56.0%
2726885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 3.99e-01 71.1% 92.0%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 45.0 4.88e-01 86.7% 94.6%
3715285 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.62 45.0 3.77e-01 76.7% 47.1%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 55.0 5.38e-01 100.0% 89.0%
3615426 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 45.0 3.76e-01 75.6% 49.3%
3888349 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 46.0 4.08e-01 78.9% 72.3%
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 47.0 4.66e-01 84.4% 75.8%
3911348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.13e-01 82.2% 97.7%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 53.0 5.02e-01 100.0% 84.5%
3622425 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.60 47.0 4.28e-01 83.3% 72.5%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.42e-01 72.2% 88.6%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 52.0 5.25e-01 100.0% 97.8%
3184235 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.59 49.0 4.23e-01 92.2% 62.8%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.33e-01 90.0% 70.0%
3598079 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 39.0 3.47e-01 72.2% 95.6%
4986681 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.57 45.0 3.84e-01 87.8% 92.3%
4187163 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.55 35.0 3.28e-01 71.1% 49.6%
3323488 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 41.0 2.92e-01 81.1% 94.7%
5028078 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.52 36.0 2.66e-01 73.3% 98.9%