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KP881232.1__AKE44693.1__Sm_phiM9_063__00062

Bact-Vir

KP881232.1__AKE44693.1__Sm_phiM9_063__00062

Identity

Accession:
KP881232 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-119_210-229
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 57.0 4.83e-01 97.0% 79.3%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 57.0 4.99e-01 99.3% 85.1%
2wn5A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.57 50.0 4.46e-01 98.5% 84.5%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 32.0 3.65e-01 91.0% 86.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 40.0 4.63e-01 91.8% 94.7%
4965902 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 35.0 3.86e-01 87.3% 73.3%
D2 high residues 131-200
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 47.0 3.80e-01 70.0% 74.8%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.68 46.0 3.77e-01 70.0% 42.2%
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.66 39.0 3.58e-01 100.0% 46.2%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.80e-01 94.3% 49.5%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.63 39.0 3.53e-01 100.0% 48.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.63 49.0 4.05e-01 90.0% 61.4%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 3.01e-01 80.0% 93.9%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.61 41.0 4.09e-01 85.7% 66.7%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 35.0 2.77e-01 87.1% 29.3%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.59 38.0 3.47e-01 100.0% 50.0%
3jb9L00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 3.07e-01 85.7% 94.5%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 2.98e-01 82.9% 96.4%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 46.0 3.07e-01 85.7% 86.9%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 3.57e-01 81.4% 67.4%
6gc1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 38.0 2.79e-01 70.0% 68.1%
4dooA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.56 40.0 3.23e-01 77.1% 83.2%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 43.0 3.01e-01 84.3% 57.6%
2hh8A00 3.30.1810.10 Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like 0.56 39.0 3.27e-01 74.3% 92.9%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 39.0 3.58e-01 75.7% 66.0%
3fk8A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 40.0 3.28e-01 75.7% 96.9%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.64e-01 71.4% 79.0%
2np9B02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.55 48.0 3.23e-01 100.0% 94.8%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.32e-01 88.6% 46.4%
4hwtA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 44.0 3.88e-01 92.9% 67.3%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.34e-01 97.1% 42.3%
7ahfA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 40.0 3.31e-01 82.9% 84.9%
1evlA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 44.0 3.84e-01 92.9% 63.4%
4r62A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 44.0 3.54e-01 94.3% 77.2%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 36.0 3.02e-01 98.6% 41.4%
6muwH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 46.0 3.42e-01 100.0% 91.8%
1n8jA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 3.10e-01 84.3% 66.7%
5bpxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 38.0 3.02e-01 77.1% 68.6%
3k2yA00 3.30.70.2330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.49e-01 81.4% 91.3%
4cy8A03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.52 36.0 2.79e-01 71.4% 60.8%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.20e-01 75.7% 53.1%
4bc3A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 41.0 3.03e-01 91.4% 63.5%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 38.0 2.61e-01 85.7% 88.1%
3ei3B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.72e-01 90.0% 91.1%
4gqaB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 35.0 2.46e-01 71.4% 66.4%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 42.0 3.18e-01 98.6% 79.0%
4hqsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 38.0 3.10e-01 81.4% 70.4%
2wp8A00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 35.0 2.44e-01 72.9% 72.7%
2b5xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 37.0 3.00e-01 81.4% 64.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960596 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.74 38.0 3.54e-01 100.0% 41.2%
168869 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 47.0 3.80e-01 70.0% 74.8%
4343474 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.69 40.0 3.57e-01 100.0% 43.2%
3711659 5.1.4.218 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT80_2nd 0.69 49.0 3.18e-01 74.3% 41.0%
4096246 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.68 38.0 4.02e-01 100.0% 61.5%
3589881 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.67 40.0 3.57e-01 100.0% 44.2%
4024732 295.1.1.40 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Microp_apicomplexa_10 0.66 49.0 4.76e-01 80.0% 86.3%
4001269 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.66 44.0 2.89e-01 70.0% 74.1%
4498285 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.65 40.0 3.59e-01 74.3% 46.3%
3247824 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 41.0 3.55e-01 91.4% 42.9%
3575677 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.65 45.0 3.25e-01 72.9% 43.5%
3226237 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 52.0 3.60e-01 95.7% 25.1%
3813321 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 49.0 3.10e-01 81.4% 93.9%
3263649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 3.53e-01 95.7% 38.5%
4332725 295.1.1.2 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.63 45.0 3.70e-01 75.7% 56.9%
3976684 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.63 54.0 5.24e-01 98.6% 88.7%
4944450 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 50.0 3.80e-01 87.1% 83.1%
3907113 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 42.0 3.28e-01 97.1% 33.5%
2576776 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.59 47.0 3.07e-01 85.7% 75.6%
5028065 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 3.11e-01 72.9% 50.9%
3783591 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 49.0 4.31e-01 92.9% 90.5%
3827259 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.59 45.0 2.98e-01 82.9% 91.2%
4600226 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.58 43.0 2.64e-01 80.0% 13.0%
3410220 5.1.4.218 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT80_2nd 0.58 40.0 2.70e-01 72.9% 35.9%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 48.0 3.95e-01 97.1% 49.6%
3678105 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.57 45.0 3.70e-01 88.6% 91.4%
3586856 2004.1.1.514 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B 0.57 46.0 2.84e-01 85.7% 82.5%
3453746 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.57 45.0 2.91e-01 84.3% 83.5%
3806993 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 44.0 3.04e-01 84.3% 86.9%
3204773 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.67e-01 91.4% 49.2%
3934099 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 46.0 4.25e-01 91.4% 85.6%
5051523 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 42.0 3.56e-01 82.9% 80.0%
5048098 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.39e-01 80.0% 56.8%
3823929 220.1.1.163 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.54 42.0 3.62e-01 97.1% 51.7%
5018498 5.1.4.29 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 0.54 44.0 2.94e-01 95.7% 92.9%
3354048 220.1.1.163 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.54 35.0 3.11e-01 72.9% 46.0%
3496646 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 37.0 2.41e-01 74.3% 49.2%
3923846 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.53 45.0 3.56e-01 100.0% 71.9%
5041549 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 3.01e-01 97.1% 92.7%
3797457 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 41.0 2.80e-01 90.0% 48.8%
5066039 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 43.0 2.63e-01 92.9% 77.8%
4528716 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.52 41.0 3.59e-01 85.7% 87.6%
3624498 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.05e-01 74.3% 52.8%
3506427 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 39.0 3.27e-01 82.9% 88.0%
4210618 3735.1.1.12 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.51 42.0 2.64e-01 97.1% 27.0%
4023242 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.51 36.0 2.99e-01 74.3% 68.8%
4213616 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.51 40.0 3.75e-01 92.9% 77.9%
3918436 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 2.62e-01 90.0% 74.0%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.50 36.0 3.19e-01 77.1% 65.5%
4974812 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 40.0 2.67e-01 91.4% 46.3%