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KP881232.1__AKE44714.1__Sm_phiM9_084__00083

Bact-Vir

KP881232.1__AKE44714.1__Sm_phiM9_084__00083

Identity

Accession:
KP881232 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Emnonavirus› Sinorhizobium_phage_phiM9

TaxID: 1636182

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 113-170
PDB
Domain cluster: rep: OM471789.1__UMM62452.1__X__00001__D31-84
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v5vA03 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.63 47.0 4.34e-01 100.0% 62.7%
3g8rA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.60 48.0 4.39e-01 93.1% 75.3%
1vliA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.60 48.0 4.69e-01 91.4% 92.3%
3girA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.60 45.0 4.10e-01 100.0% 61.5%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.59 53.0 4.52e-01 100.0% 64.5%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.58 50.0 4.66e-01 98.3% 100.0%
1kl9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 4.18e-01 86.2% 92.0%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.57 49.0 4.27e-01 100.0% 61.1%
3oo2A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.57 40.0 3.06e-01 100.0% 29.3%
5yycA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.57 40.0 3.17e-01 100.0% 33.3%
3bzcA05 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.74e-01 86.2% 81.2%
1su4A01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.56 40.0 2.95e-01 75.9% 46.3%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 45.0 3.46e-01 100.0% 39.7%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.47e-01 100.0% 98.4%
2bgoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 37.0 3.13e-01 75.9% 96.6%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.29e-01 77.6% 88.8%
4kh9A03 2.60.120.1370 Mainly Beta › Sandwich › Jelly Rolls › 0.53 37.0 3.13e-01 75.9% 94.7%
1zpuA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 36.0 2.65e-01 74.1% 35.9%
2npiA03 2.40.30.330 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain 0.53 46.0 3.84e-01 100.0% 79.6%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 43.0 3.69e-01 100.0% 59.4%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.52 37.0 3.30e-01 77.6% 85.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4105189 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 45.0 3.92e-01 100.0% 52.6%
224541 70.3.1.3 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.59 48.0 4.57e-01 91.4% 83.8%
3567138 2.1.1.133 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4503 0.59 44.0 3.38e-01 82.8% 90.7%
3587047 70.3.1.3 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.58 47.0 4.40e-01 91.4% 75.7%
4942460 70.3.1.3 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.58 46.0 4.46e-01 93.1% 82.6%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.57 50.0 5.00e-01 100.0% 98.3%
4353586 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.43e-01 100.0% 46.0%
4951499 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.53 46.0 4.30e-01 100.0% 88.0%
3283294 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 36.0 2.91e-01 75.9% 74.4%
3964485 325.1.7.1 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.51 45.0 4.27e-01 100.0% 95.7%
3299532 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 43.0 3.55e-01 98.3% 96.4%
4100241 2.1.1.113 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CvfB_2nd 0.50 38.0 3.49e-01 87.9% 84.7%