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KP881232.1__AKE44739.1__Sm_phiM9_111__00108

Bact-Vir

KP881232.1__AKE44739.1__Sm_phiM9_111__00108

Identity

Accession:
KP881232 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 49.0 4.82e-01 93.2% 68.3%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 53.0 3.43e-01 88.1% 30.4%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.67 53.0 3.61e-01 91.5% 35.6%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 47.0 3.85e-01 89.8% 41.1%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.63 54.0 5.00e-01 100.0% 76.9%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.62 45.0 3.99e-01 84.7% 52.3%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.62 46.0 4.49e-01 100.0% 71.6%
2hr2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 45.0 3.33e-01 76.3% 83.3%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.62 40.0 4.49e-01 72.9% 97.6%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 41.0 3.16e-01 71.2% 54.3%
2g0iA00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.60 43.0 3.64e-01 79.7% 96.4%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 51.0 3.43e-01 100.0% 94.1%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 41.0 2.57e-01 72.9% 20.0%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.58 45.0 3.59e-01 98.3% 39.1%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 43.0 3.98e-01 79.7% 81.6%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 49.0 3.33e-01 100.0% 41.5%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 47.0 3.13e-01 100.0% 39.9%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 50.0 3.93e-01 100.0% 98.4%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.03e-01 98.3% 76.5%
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 46.0 3.37e-01 94.9% 77.6%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 42.0 3.91e-01 88.1% 80.2%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.54e-01 98.3% 96.0%
1td6A02 3.30.1790.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein mp506/mpn330, domain 2 › hypothetical protein mp506/mpn330, domain 2 0.54 42.0 3.77e-01 93.2% 58.7%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.54 40.0 4.07e-01 89.8% 84.2%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 48.0 3.40e-01 100.0% 98.9%
7mqzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 40.0 2.83e-01 83.1% 31.6%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.53 46.0 3.44e-01 100.0% 85.8%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 34.0 3.27e-01 100.0% 57.4%
4nrvA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 43.0 3.32e-01 100.0% 39.2%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.52 42.0 3.88e-01 96.6% 67.9%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 38.0 3.33e-01 100.0% 51.1%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 37.0 2.96e-01 79.7% 91.0%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.91e-01 100.0% 41.0%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.63e-01 89.8% 73.6%
4oevA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 43.0 2.98e-01 96.6% 58.6%
2gw6A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 42.0 3.50e-01 96.6% 54.3%
1nqlB00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.51 28.0 2.99e-01 81.4% 54.2%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.51 32.0 3.06e-01 72.9% 52.1%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 36.0 2.97e-01 98.3% 41.5%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.17e-01 88.1% 57.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3879806 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.76 68.0 5.87e-01 100.0% 96.7%
4342811 864.1.1.10 a+b two layers › DLC › DLC › DLC › PF27743 0.75 65.0 5.13e-01 100.0% 65.6%
3257275 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.71 62.0 5.88e-01 100.0% 82.9%
4999946 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.70 59.0 5.38e-01 100.0% 80.0%
3252212 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.70 59.0 5.58e-01 100.0% 100.0%
1736418 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.69 49.0 4.77e-01 98.3% 67.7%
3366822 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.68 46.0 2.91e-01 71.2% 15.9%
4129336 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.67 56.0 4.30e-01 98.3% 40.7%
None 0.66 38.0 3.02e-01 71.2% 28.3%
4928954 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.65 53.0 4.31e-01 100.0% 66.9%
5051542 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 44.0 3.15e-01 100.0% 22.6%
2319350 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.64 47.0 4.41e-01 98.3% 64.8%
3734074 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.63 48.0 4.58e-01 93.2% 70.0%
3421312 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.63 43.0 4.14e-01 72.9% 85.7%
3177022 3873.1.1.1 a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › HGTP_anticodon2 0.62 44.0 3.54e-01 84.7% 37.1%
3244904 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.60 52.0 3.63e-01 100.0% 52.9%
3506749 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.60 44.0 3.24e-01 78.0% 90.9%
4325633 327.11.2.38 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_SLS1_1 0.60 40.0 4.07e-01 71.2% 68.3%
3589191 142.1.1.10 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.60 41.0 3.90e-01 71.2% 72.9%
4113442 101.26.1.2 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.60 49.0 3.75e-01 93.2% 44.1%
3624701 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 36.0 3.63e-01 100.0% 60.0%
4076504 7527.1.1.2 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.59 46.0 2.85e-01 86.4% 16.4%
5035546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.41e-01 93.2% 78.8%
2440217 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.59 35.0 4.24e-01 76.3% 92.3%
3836863 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 44.0 3.36e-01 84.7% 52.0%
4999182 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 4.17e-01 84.7% 82.7%
3806096 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 43.0 3.45e-01 84.7% 60.0%
4645555 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.57 40.0 4.25e-01 94.9% 92.0%
3420946 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 46.0 4.31e-01 93.2% 70.7%
4537675 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.57 44.0 4.51e-01 91.5% 90.9%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 46.0 2.91e-01 89.8% 57.1%
3697768 872.4.1.0 a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like 0.56 38.0 4.10e-01 79.7% 95.6%
3627712 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 45.0 2.63e-01 91.5% 45.3%
None 0.56 48.0 3.06e-01 100.0% 78.5%
5046878 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.54e-01 94.9% 93.8%
3964249 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.56 42.0 4.22e-01 93.2% 81.7%
4180555 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.56 43.0 4.46e-01 93.2% 92.7%
3405100 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.56 44.0 3.21e-01 89.8% 73.0%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.56 41.0 3.71e-01 79.7% 92.8%
4065083 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.56 43.0 4.45e-01 93.2% 92.7%
5030899 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.47e-01 94.9% 94.3%
3781705 101.1.2.527 alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.56 49.0 3.97e-01 100.0% 81.7%
3969103 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 46.0 3.87e-01 98.3% 85.8%
3407169 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.55 48.0 3.95e-01 96.6% 60.0%
3686379 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.18e-01 94.9% 77.1%
4096474 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.55 39.0 4.08e-01 94.9% 92.0%
4547498 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 44.0 2.95e-01 93.2% 20.8%
4507562 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.54 41.0 4.27e-01 93.2% 92.7%
4655 4980.1.1.1 alpha superhelices › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 › DUF3196 0.54 42.0 3.77e-01 93.2% 58.7%
4940054 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.93e-01 96.6% 95.8%
4366971 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.54 40.0 4.13e-01 89.8% 89.1%
5009817 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.54 41.0 2.73e-01 89.8% 29.8%
5049534 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.89e-01 91.5% 78.8%
4936151 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 41.0 3.17e-01 91.5% 69.4%
4465068 140.1.1.14 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.53 43.0 3.04e-01 100.0% 26.0%
3975404 4137.1.1.1 a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 0.53 37.0 3.54e-01 74.6% 72.9%
3329738 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 45.0 4.05e-01 100.0% 69.4%
3061774 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.52 35.0 3.74e-01 84.7% 93.2%
4934328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 4.01e-01 91.5% 94.3%
4440301 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.52 39.0 4.00e-01 93.2% 90.9%
None 0.52 44.0 2.50e-01 96.6% 65.9%
3377656 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.51 35.0 2.10e-01 72.9% 9.0%