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KP881232.1__AKE44785.1__Sm_phiM9_157__00154
Bact-VirKP881232.1__AKE44785.1__Sm_phiM9_157__00154
Identity
- Accession:
- KP881232 ↗
- Kingdom:
- phage
Quality
61.4
mean pLDDT
Taxonomy
TaxID: 1636182
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-83
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.73 | 55.0 | 3.98e-01 | 85.4% | 28.9% |
| 4rckA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.65 | 47.0 | 3.00e-01 | 85.4% | 15.7% |
| 2x65A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.63 | 50.0 | 3.05e-01 | 100.0% | 33.8% |
| 1h0hB01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 50.0 | 3.53e-01 | 100.0% | 88.7% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.62 | 51.0 | 5.04e-01 | 100.0% | 97.8% |
| 1tdjA03 | 3.40.1020.10 | Alpha Beta › 3-Layer(aba) Sandwich › Biosynthetic Threonine Deaminase; domain 3 › Biosynthetic Threonine Deaminase; Domain 3 | 0.62 | 48.0 | 3.42e-01 | 100.0% | 45.3% |
| 2hvfA00 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.61 | 53.0 | 4.94e-01 | 97.6% | 76.9% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.61 | 48.0 | 4.05e-01 | 97.6% | 68.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.61 | 49.0 | 3.37e-01 | 100.0% | 47.3% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.60 | 46.0 | 3.50e-01 | 97.6% | 36.9% |
| 3winE03 | 2.60.120.1090 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 48.0 | 3.70e-01 | 100.0% | 40.0% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 43.0 | 3.97e-01 | 97.6% | 98.6% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.58 | 44.0 | 3.78e-01 | 97.6% | 72.3% |
| 3d31A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 43.0 | 2.77e-01 | 87.8% | 58.4% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 44.0 | 3.70e-01 | 92.7% | 86.4% |
| 1pzxA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.56 | 46.0 | 3.43e-01 | 100.0% | 73.0% |
| 2czrA02 | 3.90.79.30 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain | 0.56 | 42.0 | 3.07e-01 | 100.0% | 29.2% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 43.0 | 3.58e-01 | 100.0% | 56.5% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.56 | 45.0 | 3.08e-01 | 100.0% | 37.5% |
| 3cdkB00 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.56 | 39.0 | 2.53e-01 | 75.6% | 39.2% |
| 2yvsA02 | 3.30.70.2560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 3.95e-01 | 92.7% | 96.6% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 41.0 | 2.54e-01 | 90.2% | 38.6% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.55 | 42.0 | 3.13e-01 | 100.0% | 31.9% |
| 1h3dA03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 45.0 | 3.96e-01 | 100.0% | 91.0% |
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.54 | 46.0 | 3.49e-01 | 100.0% | 59.8% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.54 | 42.0 | 3.45e-01 | 100.0% | 57.4% |
| 2qvpC00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 40.0 | 2.52e-01 | 85.4% | 93.7% |
| 3i6dA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.54 | 40.0 | 2.81e-01 | 100.0% | 52.1% |
| 3nlcA01 | 3.30.70.2700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 40.0 | 3.43e-01 | 90.2% | 100.0% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.53 | 37.0 | 3.24e-01 | 100.0% | 44.2% |
| 2h84A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 39.0 | 2.72e-01 | 87.8% | 23.0% |
| 3dliA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 36.0 | 2.33e-01 | 73.2% | 58.8% |
| 3h5xA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 41.0 | 3.12e-01 | 100.0% | 79.3% |
| 3c8iA00 | 2.40.410.10 | Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily | 0.51 | 35.0 | 2.75e-01 | 82.9% | 44.1% |
| 4mzuF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 2.94e-01 | 100.0% | 37.8% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 38.0 | 3.42e-01 | 100.0% | 71.1% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 39.0 | 3.42e-01 | 100.0% | 65.8% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.50 | 37.0 | 3.08e-01 | 85.4% | 88.1% |
| 5t89Y06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.21e-01 | 100.0% | 58.7% |
| 4o9gA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 38.0 | 2.66e-01 | 85.4% | 63.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5071733 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.68 | 52.0 | 4.20e-01 | 90.2% | 42.2% |
| 3601134 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.67 | 58.0 | 4.81e-01 | 95.1% | 58.6% |
| 5010674 | 4076.3.1.11 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 | 0.67 | 61.0 | 5.47e-01 | 100.0% | 78.2% |
| 3972565 | 11.1.1.993 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30426 | 0.67 | 56.0 | 4.07e-01 | 100.0% | 43.3% |
| 3479162 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.66 | 50.0 | 3.81e-01 | 87.8% | 80.9% |
| 5049869 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.63 | 48.0 | 4.06e-01 | 100.0% | 47.5% |
| 3838723 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 53.0 | 3.56e-01 | 100.0% | 40.6% |
| 4943853 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 46.0 | 3.34e-01 | 90.2% | 32.4% |
| 5011090 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 47.0 | 4.07e-01 | 100.0% | 49.3% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 48.0 | 4.29e-01 | 92.7% | 98.5% |
| 3593217 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.62 | 51.0 | 3.70e-01 | 100.0% | 76.2% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.62 | 55.0 | 5.34e-01 | 95.1% | 100.0% |
| 4679597 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.61 | 47.0 | 3.82e-01 | 97.6% | 97.9% |
| 4991571 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.60 | 47.0 | 3.96e-01 | 100.0% | 47.5% |
| 3723396 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 48.0 | 4.04e-01 | 100.0% | 72.5% |
| 4950136 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.60 | 46.0 | 3.90e-01 | 100.0% | 49.3% |
| 5025019 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.59 | 47.0 | 3.80e-01 | 100.0% | 45.2% |
| 5042678 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.59 | 44.0 | 2.84e-01 | 82.9% | 25.5% |
| 4994543 | 1.1.7.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 | 0.58 | 49.0 | 2.89e-01 | 100.0% | 22.9% |
| 4949209 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.57 | 47.0 | 3.05e-01 | 100.0% | 48.6% |
| 3398750 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.57 | 44.0 | 3.77e-01 | 100.0% | 47.5% |
| 3940885 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 46.0 | 3.64e-01 | 100.0% | 64.0% |
| 5049149 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.57 | 43.0 | 3.71e-01 | 100.0% | 50.7% |
| 3227803 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.56 | 40.0 | 3.55e-01 | 100.0% | 49.2% |
| 7677 | 4977.1.1.1 ↗ | a+b complex topology › TBP-interacting protein C-terminal domain-like › TBP-interacting protein C-terminal domain-like › TBP-interacting protein C-terminal domain-like › TBPIP_C | 0.56 | 42.0 | 3.08e-01 | 100.0% | 29.7% |
| 3591712 | 109.4.1.114 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T | 0.55 | 41.0 | 2.21e-01 | 82.9% | 6.8% |
| 3269639 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.55 | 39.0 | 2.79e-01 | 78.0% | 83.0% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.55 | 46.0 | 4.50e-01 | 100.0% | 93.3% |
| 3958083 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.55 | 39.0 | 2.30e-01 | 78.0% | 10.1% |
| 3253396 | 868.1.1.2 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase | 0.54 | 45.0 | 2.93e-01 | 97.6% | 71.2% |
| 3700687 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 37.0 | 2.31e-01 | 70.7% | 41.2% |
| 5065044 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.54 | 39.0 | 3.33e-01 | 85.4% | 100.0% |
| 3971649 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 47.0 | 3.04e-01 | 100.0% | 39.5% |
| 3576635 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 42.0 | 2.67e-01 | 85.4% | 29.0% |
| 3730463 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 2.94e-01 | 85.4% | 31.5% |
| 4019540 | 109.4.1.862 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 | 0.53 | 44.0 | 2.48e-01 | 100.0% | 14.3% |
| 3649276 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.53 | 41.0 | 3.14e-01 | 97.6% | 34.2% |
| 5061536 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.52 | 43.0 | 3.28e-01 | 95.1% | 98.1% |
| 3989505 | 6051.5.1.0 ↗ | alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain | 0.52 | 35.0 | 3.51e-01 | 75.6% | 66.7% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.51 | 40.0 | 3.96e-01 | 100.0% | 91.1% |
| 5025072 | 5069.1.1.3 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I | 0.51 | 36.0 | 2.26e-01 | 78.0% | 41.5% |
| 4975521 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.50 | 42.0 | 3.44e-01 | 100.0% | 48.2% |