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KP881232.1__AKE44837.1__Sm_phiM9_210__00206

Bact-Vir

KP881232.1__AKE44837.1__Sm_phiM9_210__00206

Identity

Accession:
KP881232 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Emnonavirus› Sinorhizobium_phage_phiM9

TaxID: 1636182

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-129
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 48.0 5.81e-01 99.2% 96.4%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 47.0 5.03e-01 95.3% 71.4%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 5.77e-01 98.4% 78.3%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 4.81e-01 92.9% 60.8%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.71 33.0 3.52e-01 79.5% 48.3%
2ns0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 45.0 5.39e-01 84.3% 96.4%
7vb8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 5.20e-01 93.7% 80.5%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 44.0 4.67e-01 100.0% 89.5%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 29.0 3.49e-01 81.1% 74.1%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 38.0 4.23e-01 93.7% 93.7%
6wimA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 28.0 3.46e-01 81.1% 81.1%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 3.73e-01 81.1% 77.7%
6wilA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 27.0 3.26e-01 85.0% 75.0%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.68e-01 80.3% 80.6%
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 29.0 3.39e-01 78.7% 81.7%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.51e-01 79.5% 76.4%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 31.0 3.46e-01 76.4% 77.0%
3bdeB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 31.0 3.44e-01 78.7% 77.8%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.50 32.0 3.61e-01 88.2% 87.8%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 26.0 3.04e-01 78.7% 68.5%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945595 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 47.0 4.93e-01 82.7% 62.6%
3831199 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 48.0 5.28e-01 87.4% 75.2%
4029192 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.77 50.0 3.51e-01 88.2% 22.4%
3625937 101.1.2.216 ↗ alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.76 55.0 5.24e-01 93.7% 64.0%
5077356 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 5.56e-01 95.3% 76.0%
3223457 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.75 46.0 3.45e-01 86.6% 27.9%
4953109 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.74 50.0 5.65e-01 93.7% 91.6%
4962051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 49.0 4.86e-01 92.9% 64.4%
4972556 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 48.0 5.71e-01 83.5% 98.8%
4117256 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.73 52.0 5.18e-01 94.5% 71.5%
3443063 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.72 53.0 4.69e-01 93.7% 53.3%
3781172 101.1.2.517 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.72 45.0 3.07e-01 87.4% 19.5%
4968526 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.72 46.0 5.37e-01 90.6% 91.1%
3597257 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 45.0 5.44e-01 96.1% 98.8%
4971999 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 5.27e-01 95.3% 76.8%
3738271 101.1.2.166 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.71 55.0 5.92e-01 99.2% 94.5%
3008377 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.71 50.0 5.20e-01 94.5% 77.5%
5002609 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 5.62e-01 93.7% 95.8%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 5.30e-01 94.5% 77.6%
3727445 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 5.17e-01 97.6% 82.9%
4659623 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.71 44.0 4.63e-01 87.4% 68.7%
4133158 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.70 47.0 5.31e-01 90.6% 90.5%
5082698 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.70 39.0 4.55e-01 85.0% 76.7%
3953587 2008.1.1.168 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 0.69 46.0 5.17e-01 90.6% 87.0%
4955510 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 4.76e-01 88.2% 64.7%
4950787 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.67 45.0 5.09e-01 90.6% 90.5%
3580866 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.67 51.0 5.27e-01 90.6% 84.2%
3167709 101.1.2.166 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.66 52.0 5.50e-01 93.7% 91.3%
4995231 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.64 38.0 4.38e-01 98.4% 81.1%
3615162 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 57.0 3.87e-01 96.9% 47.0%
4017175 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.63 50.0 4.03e-01 89.8% 44.1%
3637726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 5.13e-01 82.7% 92.7%
3708523 101.1.2.382 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD 0.62 50.0 4.19e-01 91.3% 50.7%
5044477 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 42.0 4.64e-01 84.3% 87.0%
3332597 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.61 54.0 4.33e-01 94.5% 64.2%
3597631 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.15e-01 97.6% 47.8%
3509042 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 5.08e-01 92.1% 86.9%
3262460 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.60 52.0 3.69e-01 91.3% 71.5%
3255511 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 50.0 4.30e-01 90.6% 88.9%
3178935 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.58 45.0 4.87e-01 91.3% 98.1%
3592490 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.54e-01 81.9% 94.0%
5083964 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 38.0 4.19e-01 83.5% 85.0%
3614366 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.13e-01 85.0% 68.6%
3702328 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 3.41e-01 92.9% 43.4%
3743779 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 47.0 4.43e-01 89.8% 80.0%
4012739 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.64e-01 90.6% 83.7%
3655782 101.1.2.598 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD 0.56 50.0 3.69e-01 95.3% 42.4%
3640260 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 47.0 3.99e-01 90.6% 82.4%
5061514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 51.0 4.41e-01 99.2% 94.2%
5082704 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.55 47.0 4.04e-01 90.6% 84.1%
3187460 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.55 47.0 4.11e-01 90.6% 88.1%
3692895 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.55 47.0 3.83e-01 91.3% 74.3%
3387642 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.54 28.0 3.47e-01 80.3% 78.8%
3938245 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 47.0 3.89e-01 93.7% 84.1%
4028183 304.116.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.53 32.0 3.51e-01 81.9% 71.4%
3178823 304.61.1.2 ↗ a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like 0.52 35.0 3.11e-01 79.5% 45.7%
4443506 101.1.2.517 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.52 45.0 3.08e-01 91.3% 38.4%
4986024 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 37.0 2.86e-01 73.2% 71.0%
4344201 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.51 31.0 3.59e-01 89.0% 85.6%
4289816 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.50 38.0 2.98e-01 78.0% 74.3%
3611256 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.50 47.0 2.97e-01 98.4% 28.1%
3459516 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 32.0 3.40e-01 79.5% 72.7%