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KP881232.1__AKE44854.1__Sm_phiM9_227__00223

Bact-Vir

KP881232.1__AKE44854.1__Sm_phiM9_227__00223

Identity

Accession:
KP881232 ↗
Kingdom:
phage

Quality

95.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Emnonavirus› Sinorhizobium_phage_phiM9

TaxID: 1636182

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-100
PDB
Domain cluster: rep: MG189906.1__ATS92310.1__DLP05_150__00149__D9-104
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 51.0 5.88e-01 74.5% 94.4%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.76e-01 72.4% 94.4%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.87e-01 86.7% 100.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 51.0 4.38e-01 74.5% 58.6%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.69 50.0 4.50e-01 75.5% 60.2%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.04e-01 75.5% 46.4%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 5.04e-01 70.4% 90.4%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 47.0 3.70e-01 75.5% 44.9%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 45.0 4.40e-01 71.4% 89.7%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 45.0 4.49e-01 73.5% 76.0%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 44.0 4.34e-01 70.4% 99.0%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 5.08e-01 88.8% 82.8%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 53.0 4.15e-01 89.8% 77.8%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 45.0 4.34e-01 74.5% 94.7%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 44.0 4.30e-01 71.4% 86.8%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 47.0 3.33e-01 78.6% 73.5%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 43.0 4.25e-01 71.4% 84.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.14e-01 72.4% 77.9%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 42.0 3.75e-01 73.5% 97.9%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 31.0 3.42e-01 77.6% 60.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.47e-01 75.5% 93.3%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 47.0 4.64e-01 87.8% 82.7%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 38.0 3.56e-01 70.4% 93.6%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 43.0 4.21e-01 80.6% 89.4%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.55 50.0 3.93e-01 100.0% 51.3%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.55e-01 84.7% 85.5%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.36e-01 83.7% 73.6%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.40e-01 84.7% 76.6%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.77e-01 79.6% 66.1%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.56e-01 80.6% 67.4%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.65e-01 85.7% 88.0%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 38.0 3.60e-01 77.6% 76.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.52 41.0 4.24e-01 100.0% 91.4%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.52 44.0 3.48e-01 95.9% 82.5%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 35.0 2.93e-01 93.9% 37.7%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.91e-01 87.8% 83.9%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 40.0 3.40e-01 86.7% 64.0%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.50e-01 80.6% 70.8%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 80.0 8.00e-01 91.8% 93.0%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.90 54.0 6.97e-01 71.4% 100.0%
3272197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 81.0 7.89e-01 95.9% 91.4%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 55.0 6.77e-01 73.5% 98.4%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.82 51.0 5.07e-01 71.4% 61.0%
3855974 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.79 50.0 5.70e-01 74.5% 84.0%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.79 50.0 5.73e-01 70.4% 85.1%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.78 48.0 5.42e-01 74.5% 80.0%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.77 48.0 5.44e-01 74.5% 81.3%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 48.0 5.87e-01 71.4% 95.4%
3322460 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.75 56.0 5.31e-01 77.6% 69.6%
3650296 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.75 54.0 5.56e-01 75.5% 82.1%
3830352 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.74 55.0 5.84e-01 76.5% 94.1%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 50.0 5.36e-01 78.6% 81.2%
3492026 4.1.1.129 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.73 47.0 4.64e-01 75.5% 61.0%
4016602 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.73 53.0 4.63e-01 75.5% 85.3%
3707346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.73e-01 74.5% 89.2%
3717986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 50.0 4.73e-01 74.5% 60.9%
3713672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 4.86e-01 73.5% 64.3%
3585492 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.72 52.0 4.99e-01 75.5% 66.4%
3709279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.29e-01 87.8% 78.9%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.71 51.0 5.15e-01 74.5% 92.0%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 4.93e-01 78.6% 63.3%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 48.0 4.15e-01 73.5% 45.3%
4936914 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.71 48.0 4.70e-01 76.5% 63.8%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 49.0 5.50e-01 72.4% 92.0%
4002655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 4.33e-01 71.4% 64.3%
3642926 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 49.0 3.86e-01 70.4% 41.6%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 47.0 4.91e-01 73.5% 74.4%
3888395 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.70 51.0 5.43e-01 74.5% 96.4%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 48.0 5.00e-01 73.5% 76.7%
3718969 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 50.0 4.10e-01 74.5% 77.1%
4235293 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.59e-01 71.4% 82.6%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 47.0 5.29e-01 72.4% 93.3%
3608562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 4.74e-01 87.8% 72.3%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.68 50.0 4.52e-01 76.5% 73.1%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 47.0 4.69e-01 87.8% 70.0%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 45.0 4.62e-01 71.4% 70.5%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.67 45.0 4.78e-01 74.5% 78.8%
4272564 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.67 47.0 4.62e-01 88.8% 66.7%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.67 45.0 4.81e-01 73.5% 80.0%
3953109 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 46.0 4.67e-01 74.5% 72.6%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 49.0 4.28e-01 87.8% 51.7%
3263467 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 45.0 4.93e-01 70.4% 85.0%
4021079 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.66 52.0 4.09e-01 82.7% 92.3%
3608011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.88e-01 84.7% 68.3%
1117666 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.66 49.0 5.29e-01 87.8% 90.6%
5032454 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 50.0 4.54e-01 80.6% 78.5%
3646890 4.25.1.1 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.65 53.0 5.63e-01 90.8% 98.8%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 44.0 4.64e-01 88.8% 76.7%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.64 42.0 4.42e-01 73.5% 73.3%
3205559 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.64 46.0 4.02e-01 74.5% 58.6%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 45.0 4.62e-01 89.8% 75.8%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 46.0 4.47e-01 87.8% 67.3%
3733191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 3.49e-01 87.8% 58.7%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 5.01e-01 75.5% 97.5%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.63 47.0 4.77e-01 76.5% 83.2%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 44.0 4.39e-01 89.8% 70.0%
3785900 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 3.34e-01 87.8% 52.8%
4257482 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.63 43.0 3.33e-01 70.4% 75.3%
3594413 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 45.0 4.92e-01 76.5% 95.0%
5063379 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.62 51.0 4.18e-01 89.8% 81.1%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.61 50.0 4.54e-01 87.8% 85.4%
4209798 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.61 44.0 4.66e-01 75.5% 92.9%
4943928 1.1.7.140 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 0.60 45.0 4.08e-01 78.6% 99.2%
4015954 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 49.0 3.71e-01 89.8% 73.6%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 42.0 4.53e-01 74.5% 93.8%
4329871 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.59 48.0 3.90e-01 89.8% 77.9%
5072772 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.58 47.0 3.74e-01 87.8% 71.0%
3447254 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 47.0 3.62e-01 89.8% 74.5%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.57 41.0 3.88e-01 76.5% 76.7%
5002153 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 45.0 4.47e-01 84.7% 87.0%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.56 46.0 4.26e-01 87.8% 84.8%
5051220 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 42.0 4.35e-01 79.6% 96.7%
3443107 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.56 45.0 3.51e-01 89.8% 71.6%
3462061 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 45.0 3.50e-01 90.8% 74.9%
3399943 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.53 42.0 3.80e-01 87.8% 91.4%
3511505 9.23.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › DUF7042 0.52 42.0 4.01e-01 89.8% 94.2%
3471723 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 41.0 3.83e-01 87.8% 93.3%