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KP881232.1__AKE44889.1__Sm_phiM9_262__00258
Bact-VirKP881232.1__AKE44889.1__Sm_phiM9_262__00258
Identity
- Accession:
- KP881232 ↗
- Kingdom:
- phage
Quality
75.1
mean pLDDT
Taxonomy
TaxID: 1636182
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 25-76
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.84 | 75.0 | 5.83e-01 | 100.0% | 48.2% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.80 | 55.0 | 5.72e-01 | 94.2% | 77.6% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 63.0 | 5.77e-01 | 98.1% | 66.7% |
| 4fppB01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.77 | 65.0 | 5.90e-01 | 100.0% | 69.0% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.76 | 60.0 | 5.66e-01 | 88.5% | 72.6% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 65.0 | 5.88e-01 | 98.1% | 73.2% |
| 1wp1B01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.74 | 65.0 | 3.86e-01 | 100.0% | 14.5% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 65.0 | 6.01e-01 | 98.1% | 80.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.72 | 63.0 | 5.35e-01 | 100.0% | 72.9% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 56.0 | 5.48e-01 | 92.3% | 81.0% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 39.0 | 2.96e-01 | 75.0% | 24.2% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 59.0 | 4.39e-01 | 98.1% | 73.0% |
| 7k9cA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 46.0 | 3.93e-01 | 76.9% | 40.7% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 57.0 | 5.32e-01 | 100.0% | 73.1% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.69 | 52.0 | 5.34e-01 | 82.7% | 91.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.68 | 51.0 | 4.29e-01 | 88.5% | 47.7% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 60.0 | 4.80e-01 | 100.0% | 64.1% |
| 6h9xA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.67 | 56.0 | 4.63e-01 | 100.0% | 52.9% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 51.0 | 4.95e-01 | 86.5% | 84.5% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 46.0 | 4.19e-01 | 90.4% | 53.3% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.64 | 51.0 | 4.65e-01 | 88.5% | 66.2% |
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 57.0 | 3.48e-01 | 100.0% | 16.7% |
| 2ccmA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.63 | 51.0 | 3.51e-01 | 98.1% | 24.7% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.62 | 54.0 | 4.87e-01 | 100.0% | 85.1% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.62 | 52.0 | 5.00e-01 | 96.2% | 82.0% |
| 2y0eB03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 52.0 | 3.49e-01 | 100.0% | 61.6% |
| 3k62A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 48.0 | 2.86e-01 | 88.5% | 13.8% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.59 | 46.0 | 3.99e-01 | 94.2% | 53.2% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 45.0 | 4.14e-01 | 82.7% | 70.6% |
| 4zy7A00 | 3.30.1050.40 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › | 0.58 | 49.0 | 3.76e-01 | 92.3% | 52.9% |
| 4qjfB01 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 40.0 | 4.00e-01 | 82.7% | 74.1% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 43.0 | 3.89e-01 | 84.6% | 96.0% |
| 2fh5A01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 44.0 | 3.49e-01 | 96.2% | 39.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3221606 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.85 | 77.0 | 6.00e-01 | 100.0% | 52.4% |
| 2720300 | 192.22.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 › RLIP76_Ral-bd | 0.84 | 63.0 | 6.37e-01 | 92.3% | 80.4% |
| 2394365 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.82 | 69.0 | 5.97e-01 | 100.0% | 61.5% |
| 3172910 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.80 | 70.0 | 5.59e-01 | 100.0% | 49.5% |
| 3973994 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.80 | 71.0 | 6.31e-01 | 100.0% | 72.0% |
| 3802185 | 192.8.1.359 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641 | 0.80 | 70.0 | 6.34e-01 | 100.0% | 72.9% |
| 3802497 | 109.4.1.1350 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA, PF31007 | 0.79 | 71.0 | 3.82e-01 | 100.0% | 5.1% |
| 3925160 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.79 | 60.0 | 4.04e-01 | 100.0% | 22.6% |
| 3715120 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.79 | 59.0 | 5.65e-01 | 80.8% | 70.0% |
| 3296414 | 192.29.1.168 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 | 0.79 | 66.0 | 6.03e-01 | 96.2% | 70.0% |
| 3219646 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.77 | 61.0 | 6.01e-01 | 96.2% | 83.6% |
| 3980428 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.77 | 69.0 | 6.07e-01 | 100.0% | 73.3% |
| 3336677 | 605.1.1.132 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 | 0.77 | 64.0 | 5.70e-01 | 96.2% | 65.3% |
| 2337262 | 1189.1.1.1 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop | 0.76 | 67.0 | 5.42e-01 | 100.0% | 52.6% |
| 3774397 | 150.5.1.67 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › NEDD4_Bsd2 | 0.75 | 66.0 | 5.42e-01 | 100.0% | 56.8% |
| 4805104 | 601.19.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein | 0.71 | 60.0 | 5.28e-01 | 100.0% | 74.7% |
| 4031113 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.71 | 61.0 | 4.39e-01 | 100.0% | 35.0% |
| 4957380 | 1076.1.1.4 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › PrsW-protease | 0.70 | 62.0 | 3.82e-01 | 100.0% | 16.8% |
| 3614664 | 109.4.1.1329 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20, PF31234 | 0.69 | 57.0 | 3.19e-01 | 96.2% | 7.1% |
| 4516608 | 109.1.1.36 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N | 0.69 | 58.0 | 4.04e-01 | 96.2% | 32.0% |
| 3832 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.68 | 60.0 | 4.80e-01 | 100.0% | 64.1% |
| 1566346 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 55.0 | 4.97e-01 | 100.0% | 67.6% |
| 5047756 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 57.0 | 3.94e-01 | 98.1% | 71.2% |
| 4029754 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 52.0 | 4.53e-01 | 100.0% | 69.4% |
| 4954772 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.60 | 40.0 | 4.02e-01 | 71.2% | 74.5% |
| 2802499 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.60 | 52.0 | 4.28e-01 | 100.0% | 73.2% |
| 3391169 | 103.4.1.25 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628 | 0.57 | 46.0 | 4.17e-01 | 88.5% | 72.9% |
| 3931209 | 101.1.10.17 ↗ | alpha arrays › HTH › HTH › Cyclin-like › CycT2-like_C | 0.55 | 47.0 | 3.66e-01 | 96.2% | 72.2% |