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KP890822.1__AKA61860.1__Pm5460_50__00051

Bact-Vir

KP890822.1__AKA61860.1__Pm5460_50__00051

Identity

Accession:
KP890822 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Acadevirus› Proteus_phage_vB_PmiP_Pm5460

TaxID: 1636249

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-38
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 51.0 3.72e-01 73.7% 31.9%
2pohA02 6.10.140.940 Special › Helix non-globular › Helix Hairpins › 0.68 52.0 4.19e-01 100.0% 41.6%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.67 48.0 3.06e-01 76.3% 47.7%
4hv0C00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.67 53.0 4.06e-01 89.5% 48.3%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.66 54.0 3.15e-01 92.1% 22.0%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.66 56.0 3.77e-01 100.0% 87.8%
5owcA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.66 58.0 4.01e-01 100.0% 51.6%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.65 56.0 3.41e-01 97.4% 18.9%
2c20A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 53.0 3.43e-01 100.0% 24.6%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.63 53.0 3.40e-01 92.1% 72.6%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 4.07e-01 97.4% 90.5%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.76e-01 94.7% 91.0%
4zrmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 52.0 3.37e-01 100.0% 25.9%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.62 49.0 4.28e-01 89.5% 83.3%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.62 51.0 3.47e-01 97.4% 45.9%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 3.50e-01 100.0% 55.6%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.64e-01 94.7% 86.7%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.60 40.0 4.08e-01 100.0% 72.2%
1b48A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 47.0 3.46e-01 84.2% 83.3%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 3.90e-01 100.0% 87.1%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.59 50.0 3.07e-01 94.7% 21.2%
5z9tA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 42.0 2.34e-01 73.7% 8.5%
4xhpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 49.0 3.29e-01 100.0% 66.3%
3cwvA02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 49.0 3.25e-01 94.7% 75.5%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 50.0 3.42e-01 100.0% 50.7%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.57 49.0 2.89e-01 100.0% 14.5%
3p3vA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.56 43.0 2.87e-01 84.2% 81.4%
1e8cA01 3.40.1390.10 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain 0.56 41.0 3.21e-01 89.5% 92.1%
5jpoD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 3.39e-01 100.0% 93.9%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.36e-01 100.0% 90.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959171 4029.1.1.0 ↗ a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like 0.73 48.0 4.76e-01 89.5% 65.0%
3911250 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.73 56.0 3.10e-01 89.5% 5.6%
3775175 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.73 51.0 3.64e-01 73.7% 28.0%
3757451 3755.3.1.297 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.69 54.0 3.74e-01 100.0% 31.2%
4665476 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.68 54.0 3.32e-01 86.8% 65.6%
4987757 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.68 58.0 4.26e-01 100.0% 58.7%
5042171 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.68 58.0 4.20e-01 100.0% 57.3%
2878178 2003.1.1.72 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.67 53.0 3.11e-01 100.0% 14.5%
5040105 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.66 51.0 3.59e-01 84.2% 45.5%
3221335 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.65 56.0 3.27e-01 100.0% 47.3%
3285436 3380.1.1.0 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 0.65 47.0 4.05e-01 78.9% 68.3%
3387004 3470.1.1.45 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF1440 0.64 51.0 3.50e-01 100.0% 81.2%
5052532 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.64 51.0 3.90e-01 92.1% 37.8%
3272928 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 47.0 2.95e-01 78.9% 18.0%
5025566 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.64 50.0 4.45e-01 86.8% 60.0%
3946198 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 47.0 3.90e-01 94.7% 92.9%
4073860 5086.1.1.67 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Neurensin 0.63 54.0 3.71e-01 100.0% 28.9%
3476123 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 45.0 4.66e-01 76.3% 97.1%
4973619 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.63 52.0 3.35e-01 92.1% 24.1%
4112182 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 54.0 3.81e-01 100.0% 82.2%
4181293 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 53.0 3.85e-01 100.0% 88.2%
3412176 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.62 45.0 3.37e-01 100.0% 30.7%
3828683 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.61 44.0 3.17e-01 81.6% 24.4%
3284225 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 3.96e-01 94.7% 95.0%
3818226 7558.1.1.1 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase 0.61 50.0 3.01e-01 92.1% 18.5%
4955657 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.60 49.0 2.98e-01 100.0% 81.1%
4931635 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.60 51.0 4.00e-01 97.4% 95.2%
1240484 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.60 47.0 2.75e-01 84.2% 15.3%
3187789 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.60 52.0 3.02e-01 94.7% 13.4%
4996087 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.60 44.0 2.97e-01 92.1% 21.5%
3969371 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 3.71e-01 92.1% 50.0%
3969385 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 3.84e-01 92.1% 56.2%
3960493 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.60 42.0 2.96e-01 76.3% 24.0%
4940192 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 50.0 3.62e-01 100.0% 48.2%
4942823 7512.1.1.62 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_3 0.58 48.0 2.96e-01 89.5% 42.1%
4857394 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.58 47.0 3.29e-01 92.1% 35.5%
3230011 6106.1.1.0 ↗ extended segments › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY 0.58 45.0 3.57e-01 89.5% 45.9%
5008285 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.58 52.0 3.07e-01 100.0% 59.6%
5060781 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 42.0 3.31e-01 84.2% 35.6%
5040463 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.57 52.0 3.08e-01 100.0% 18.3%
4983681 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 49.0 2.95e-01 100.0% 41.9%
3814043 101.1.10.21 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C 0.57 45.0 2.79e-01 97.4% 77.4%
3281989 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.56 45.0 2.69e-01 86.8% 40.8%
4026332 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.56 46.0 3.22e-01 89.5% 53.6%
3739336 2498.1.1.69 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PIG-S 0.54 47.0 3.07e-01 100.0% 94.1%
3279636 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 41.0 3.39e-01 100.0% 82.2%
2867996 101.1.2.457 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_AprA 0.54 44.0 3.02e-01 100.0% 31.4%
3945660 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 41.0 3.44e-01 100.0% 88.2%
3986250 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.53 44.0 2.85e-01 100.0% 18.0%
3603208 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 47.0 3.86e-01 100.0% 70.0%
3878133 375.1.1.265 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-FCS 0.53 39.0 3.87e-01 78.9% 90.0%
3528204 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.52 38.0 3.79e-01 78.9% 90.0%
4027159 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.52 39.0 3.04e-01 100.0% 83.5%
4014117 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 46.0 2.65e-01 100.0% 72.6%