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KR011061.1__AKJ71631.1__SPI1_38__00038

Bact-Vir

KR011061.1__AKJ71631.1__SPI1_38__00038

Identity

Accession:
KR011061 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skermania_phage_SPI1

TaxID: 1636544

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-45_131-164
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w3fA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.52 45.0 3.62e-01 100.0% 67.3%
2pokA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.32e-01 92.4% 79.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3820830 11.1.1.182 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.50 41.0 3.51e-01 93.7% 87.9%
D2 medium residues 46-130
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.67 41.0 3.60e-01 100.0% 39.7%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.64 47.0 4.05e-01 100.0% 48.9%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.63 45.0 3.87e-01 98.8% 44.5%
1uunA01 2.60.40.1650 Mainly Beta › Sandwich › Immunoglobulin-like › Porin MspA (Ig-like beta-sandwich domain) 0.63 47.0 4.11e-01 100.0% 51.5%
3bb6C00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 34.0 3.13e-01 100.0% 39.3%
2a74D01 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.62 40.0 3.52e-01 98.8% 43.8%
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.61 38.0 3.63e-01 89.4% 52.5%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.60 39.0 3.54e-01 100.0% 47.4%
4brvA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.60 40.0 3.60e-01 100.0% 47.6%
1a8mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 3.97e-01 100.0% 49.3%
4kkpA02 2.60.40.3880 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.77e-01 100.0% 56.6%
4ypjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.96e-01 100.0% 58.8%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.00e-01 100.0% 63.5%
4iihB04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.27e-01 100.0% 72.9%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.62e-01 97.6% 47.1%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.23e-01 100.0% 49.6%
2x41A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.03e-01 100.0% 66.4%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.00e-01 100.0% 68.1%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.59e-01 100.0% 55.1%
5hccB03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.67e-01 100.0% 58.7%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.69e-01 100.0% 63.6%
2xvlA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.28e-01 88.2% 46.9%
2fauA02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.68e-01 100.0% 56.9%
5jp0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.78e-01 100.0% 63.7%
4cvuA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.57e-01 100.0% 61.2%
2q7nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.37e-01 100.0% 58.2%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.51 34.0 3.31e-01 100.0% 58.8%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.50 34.0 3.69e-01 100.0% 88.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021913 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.72 40.0 3.99e-01 100.0% 52.2%
5041465 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 46.0 4.16e-01 100.0% 52.2%
4972682 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 41.0 3.82e-01 88.2% 48.6%
4932993 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 49.0 4.72e-01 100.0% 71.6%
3721009 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 41.0 4.01e-01 100.0% 59.1%
3800479 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.62 45.0 3.73e-01 100.0% 41.9%
5036138 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 35.0 3.59e-01 88.2% 55.3%
5033996 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 49.0 3.53e-01 100.0% 29.8%
4947556 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 3.95e-01 100.0% 47.3%
5005735 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.18e-01 100.0% 68.9%
4946493 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 39.0 3.86e-01 100.0% 62.2%
3242247 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.59 38.0 3.43e-01 100.0% 44.8%
4937309 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.18e-01 100.0% 67.6%
3573045 11.1.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.57 43.0 3.83e-01 100.0% 55.2%
3837164 11.1.4.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 0.57 36.0 3.29e-01 100.0% 46.1%
3705968 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 45.0 3.80e-01 100.0% 50.3%
3176441 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.56 50.0 3.84e-01 100.0% 57.5%
3805346 11.1.4.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 0.56 35.0 3.24e-01 78.8% 45.2%
4947414 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.00e-01 100.0% 61.7%
3520754 3156.1.1.18 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › CLPTM1 0.56 40.0 3.11e-01 100.0% 31.4%
3701530 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 36.0 3.35e-01 100.0% 50.9%
4074310 11.1.1.182 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.55 45.0 3.99e-01 100.0% 60.0%
3904967 11.1.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.54 43.0 3.93e-01 100.0% 64.3%
3203691 11.1.1.667 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N 0.54 43.0 3.53e-01 100.0% 47.1%
5035506 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.83e-01 100.0% 70.5%
4458090 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.54 43.0 3.86e-01 100.0% 61.7%
3899364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.77e-01 100.0% 63.6%
4979953 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.88e-01 100.0% 65.2%
4020668 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.53 41.0 3.71e-01 100.0% 60.0%
3576119 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 46.0 3.79e-01 100.0% 52.7%
3236287 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.52 45.0 3.42e-01 100.0% 56.4%
5082838 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.41e-01 100.0% 67.5%
3389071 11.1.1.63 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_alpha 0.52 39.0 3.26e-01 100.0% 43.8%
4944159 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 36.0 2.77e-01 74.1% 85.1%
3738990 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.51 44.0 3.01e-01 100.0% 31.8%
3189338 11.1.1.182 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.51 44.0 3.41e-01 100.0% 40.9%
5011055 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 39.0 3.10e-01 84.7% 44.9%
3576642 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.51 44.0 3.57e-01 100.0% 51.8%
3999001 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.50 38.0 3.56e-01 98.8% 65.7%
3910406 11.1.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.50 39.0 3.61e-01 100.0% 63.5%
5054941 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.75e-01 100.0% 65.8%