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KR011061.1__AKJ71639.1__SPI1_46__00046

Bact-Vir

KR011061.1__AKJ71639.1__SPI1_46__00046

Identity

Accession:
KR011061 ↗
Kingdom:
phage

Quality

69.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skermania_phage_SPI1

TaxID: 1636544

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-154
PDB
Domain cluster: rep: NC_071004.1__YP_010675483.1__PQD13_gp54__00054__D91-174
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23781.2 best Phage_TAC_16 81.6 5.80e-23 94.8% 78.8%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.77 62.0 6.31e-01 94.8% 87.5%
2osaA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.60 52.0 4.25e-01 99.0% 88.3%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.60 51.0 4.94e-01 93.8% 89.7%
2ee4A01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.58 50.0 4.06e-01 97.9% 88.5%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 28.0 3.40e-01 96.9% 74.1%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 29.0 3.16e-01 80.4% 60.3%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 38.0 4.06e-01 73.2% 81.6%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 28.0 3.31e-01 94.8% 73.0%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.53 34.0 3.89e-01 100.0% 87.7%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 44.0 3.99e-01 91.8% 94.8%
4l3tA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 38.0 2.96e-01 78.4% 78.3%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 36.0 3.33e-01 73.2% 95.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185252 3547.1.1.1 ↗ a+b two layers › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › DUF6848 0.77 62.0 6.31e-01 94.8% 87.5%
4954554 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.71 63.0 6.15e-01 96.9% 92.4%
4015019 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 40.0 2.88e-01 79.4% 22.4%
4927432 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.69 53.0 5.82e-01 89.7% 100.0%
3944499 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.68 55.0 5.85e-01 94.8% 100.0%
4957561 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.68 60.0 5.85e-01 96.9% 98.1%
3684944 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.65 36.0 3.72e-01 82.5% 56.8%
3965726 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.63 51.0 5.42e-01 88.7% 100.0%
3771647 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.58 50.0 3.40e-01 99.0% 42.1%
3922866 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.58 48.0 4.03e-01 94.8% 83.3%
4973412 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.57 32.0 3.63e-01 83.5% 72.0%
4043835 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.56 33.0 3.24e-01 90.7% 53.3%
165240 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.56 46.0 3.72e-01 95.9% 80.2%
4983622 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 40.0 3.40e-01 93.8% 48.5%