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KR011062.1__AKJ71756.1__TIN2_66__00066

Bact-Vir

KR011062.1__AKJ71756.1__TIN2_66__00066

Identity

Accession:
KR011062 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tinduovirus› Tsukamurella_phage_TIN2

TaxID: 1636545

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-53
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.70 48.0 4.39e-01 100.0% 54.0%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.68 48.0 3.65e-01 93.8% 30.3%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.00e-01 100.0% 39.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.28e-01 83.3% 55.4%
2dyiA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.67 46.0 3.97e-01 100.0% 42.9%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.65 52.0 4.23e-01 100.0% 47.3%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 47.0 4.07e-01 87.5% 51.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.64 41.0 3.24e-01 100.0% 29.4%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 46.0 3.88e-01 100.0% 43.7%
3ep6B01 3.30.360.50 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase 0.62 43.0 4.53e-01 100.0% 85.4%
1mhmB00 3.30.360.50 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase 0.61 42.0 4.09e-01 100.0% 64.8%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 41.0 3.46e-01 72.9% 41.8%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.59 45.0 3.79e-01 100.0% 47.2%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 44.0 3.62e-01 83.3% 91.2%
1tm0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 45.0 3.30e-01 100.0% 29.5%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 46.0 4.67e-01 100.0% 91.3%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.58 47.0 3.99e-01 100.0% 53.2%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.58 48.0 3.80e-01 100.0% 51.4%
5tvoB00 3.30.360.50 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase 0.58 40.0 3.77e-01 100.0% 59.3%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.58 45.0 4.32e-01 100.0% 75.8%
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.58 40.0 3.35e-01 77.1% 62.5%
2cqoA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 49.0 4.04e-01 100.0% 87.0%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 49.0 4.08e-01 100.0% 55.1%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.71e-01 100.0% 57.1%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 48.0 3.86e-01 100.0% 48.0%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 49.0 3.91e-01 100.0% 71.4%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.12e-01 100.0% 64.4%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.54 38.0 2.93e-01 79.2% 45.2%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.54 42.0 2.77e-01 100.0% 72.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.42e-01 72.9% 62.9%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 43.0 3.12e-01 100.0% 39.8%
5j39A01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 46.0 3.42e-01 100.0% 78.6%
2cg7A02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 39.0 4.00e-01 100.0% 93.2%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 42.0 3.09e-01 100.0% 39.0%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.51e-01 100.0% 55.6%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 32.0 3.08e-01 70.8% 52.6%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.39e-01 100.0% 51.6%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.50 36.0 3.73e-01 100.0% 89.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 48.0 3.80e-01 89.6% 35.8%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.62e-01 100.0% 61.7%
3177693 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 57.0 3.44e-01 100.0% 12.6%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 49.0 4.68e-01 100.0% 64.9%
4124092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.88e-01 100.0% 62.9%
5048008 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.68 48.0 3.30e-01 77.1% 62.9%
4269861 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.60e-01 100.0% 53.8%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 49.0 4.04e-01 93.8% 42.2%
4872438 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.66 58.0 5.28e-01 100.0% 76.6%
4051652 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 48.0 3.94e-01 100.0% 41.1%
3981045 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 48.0 3.43e-01 100.0% 25.2%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 49.0 4.07e-01 93.8% 44.4%
4682440 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 47.0 3.90e-01 100.0% 41.1%
3966626 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 47.0 3.89e-01 100.0% 43.3%
4416787 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 50.0 4.19e-01 100.0% 48.9%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 47.0 3.87e-01 100.0% 43.3%
1213522 1.1.13.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_B-dom 0.63 46.0 3.87e-01 100.0% 43.7%
4438946 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 50.0 4.29e-01 100.0% 52.9%
4449344 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 50.0 4.15e-01 100.0% 48.9%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.63 49.0 4.76e-01 97.9% 76.4%
3710369 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 44.0 2.80e-01 81.2% 36.1%
3585671 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 45.0 4.53e-01 97.9% 78.0%
4065090 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.61 51.0 4.21e-01 100.0% 52.6%
4395520 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 44.0 3.63e-01 100.0% 41.1%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 52.0 4.28e-01 100.0% 53.3%
4074297 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.60 52.0 3.99e-01 100.0% 62.6%
3850092 4099.1.1.21 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › RM3_Med14 0.60 37.0 3.11e-01 70.8% 33.3%
4440308 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 46.0 3.78e-01 100.0% 45.3%
4138546 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 47.0 3.91e-01 100.0% 48.9%
4208972 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 43.0 3.53e-01 100.0% 40.0%
4042679 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 47.0 4.00e-01 100.0% 52.9%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 45.0 4.08e-01 100.0% 60.0%
4197235 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 48.0 4.00e-01 100.0% 51.6%
4353877 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 44.0 3.68e-01 100.0% 45.3%
4220217 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 45.0 3.72e-01 100.0% 46.3%
3212681 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 3.68e-01 100.0% 53.3%
4662737 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 43.0 3.69e-01 100.0% 48.9%
3854997 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.56 42.0 2.39e-01 85.4% 53.1%
4188663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 45.0 3.76e-01 100.0% 47.4%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.56 48.0 4.05e-01 100.0% 57.6%
3315096 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.85e-01 70.8% 91.4%
4139867 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.56 46.0 3.83e-01 100.0% 51.6%
4963006 4.1.1.490 ↗ beta barrels › SH3 › SH3 › SH3 › PF26269 0.55 41.0 3.62e-01 100.0% 51.8%
3229426 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 41.0 2.61e-01 89.6% 26.1%
5018084 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 3.59e-01 100.0% 92.4%
4132820 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 43.0 3.54e-01 100.0% 53.3%
3427431 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 31.0 3.51e-01 83.3% 93.3%
4197449 109.2.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like 0.51 36.0 2.15e-01 87.5% 9.0%
3267250 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.63e-01 100.0% 88.7%