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KR052482.1__AKF13639.1__PHIN3_376__00376
Bact-VirKR052482.1__AKF13639.1__PHIN3_376__00376
Identity
- Accession:
- KR052482 ↗
- Kingdom:
- phage
Quality
88.1
mean pLDDT
Taxonomy
TaxID: 1647405
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-65
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4z32A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.74 | 45.0 | 3.84e-01 | 82.0% | 39.6% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.62 | 45.0 | 4.53e-01 | 86.9% | 75.8% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 45.0 | 3.85e-01 | 82.0% | 53.3% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 43.0 | 4.19e-01 | 77.0% | 77.9% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.60 | 43.0 | 3.73e-01 | 78.7% | 83.5% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 44.0 | 3.86e-01 | 88.5% | 54.3% |
| 3sjnA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 48.0 | 4.03e-01 | 100.0% | 68.9% |
| 1nnjA01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.57 | 41.0 | 3.33e-01 | 78.7% | 89.4% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.54 | 33.0 | 3.23e-01 | 88.5% | 54.4% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.54 | 38.0 | 2.88e-01 | 80.3% | 72.4% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.53 | 41.0 | 2.97e-01 | 83.6% | 31.4% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 41.0 | 3.60e-01 | 96.7% | 95.3% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.51 | 38.0 | 3.05e-01 | 86.9% | 82.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164102 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.77 | 50.0 | 5.76e-01 | 82.0% | 91.1% |
| 3774381 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.74 | 49.0 | 4.71e-01 | 80.3% | 60.0% |
| 3629491 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.71 | 48.0 | 5.04e-01 | 82.0% | 78.2% |
| 5045719 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 54.0 | 4.35e-01 | 100.0% | 45.2% |
| 3259426 | 4351.1.1.1 ↗ | alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 | 0.64 | 57.0 | 3.79e-01 | 100.0% | 88.2% |
| 4959885 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.63 | 44.0 | 4.06e-01 | 83.6% | 54.1% |
| 3287903 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.60 | 38.0 | 4.09e-01 | 72.1% | 78.0% |
| 4959884 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.60 | 45.0 | 4.69e-01 | 85.2% | 90.9% |
| 3925738 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 44.0 | 3.68e-01 | 82.0% | 44.5% |
| 3549045 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 46.0 | 3.83e-01 | 95.1% | 47.3% |
| 4951189 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.59 | 39.0 | 4.18e-01 | 77.0% | 82.0% |
| 3996291 | 4351.1.1.1 ↗ | alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 | 0.59 | 53.0 | 3.57e-01 | 100.0% | 95.9% |
| 3514660 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 43.0 | 3.84e-01 | 80.3% | 54.4% |
| 4955536 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.55 | 47.0 | 3.29e-01 | 100.0% | 52.7% |
| 3903350 | 386.1.1.280 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27047 | 0.55 | 40.0 | 3.98e-01 | 80.3% | 81.5% |
| 4959053 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 46.0 | 4.42e-01 | 100.0% | 85.7% |
| 3605970 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 40.0 | 3.39e-01 | 83.6% | 80.0% |
| 3991383 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 44.0 | 4.00e-01 | 100.0% | 66.7% |
| 3709649 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.53 | 44.0 | 3.59e-01 | 98.4% | 90.0% |
| 3706713 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 44.0 | 2.69e-01 | 100.0% | 15.3% |
| 3503377 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.52 | 44.0 | 3.79e-01 | 100.0% | 69.5% |
| 3502794 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.52 | 35.0 | 3.47e-01 | 72.1% | 70.8% |
| 3265225 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 2.84e-01 | 100.0% | 63.5% |
| 3742632 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.51 | 45.0 | 2.93e-01 | 100.0% | 42.4% |
| 3864474 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 37.0 | 2.93e-01 | 85.2% | 83.0% |
| 4081834 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 39.0 | 3.32e-01 | 86.9% | 50.9% |
| 4271291 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 38.0 | 3.76e-01 | 98.4% | 77.1% |
| 4492006 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.50 | 42.0 | 2.87e-01 | 100.0% | 76.3% |