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KR052482.1__AKF13647.1__PHIN3_384__00384

Bact-Vir

KR052482.1__AKF13647.1__PHIN3_384__00384

Identity

Accession:
KR052482 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-36
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4piwA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.80 69.0 4.12e-01 100.0% 69.2%
4dg8A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.78 63.0 4.71e-01 100.0% 38.0%
4oycB00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.77 64.0 4.78e-01 100.0% 42.7%
1z7dA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.76 64.0 3.85e-01 100.0% 71.9%
3p0tA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.75 66.0 4.33e-01 100.0% 27.2%
1bs0A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.73 59.0 3.61e-01 100.0% 71.1%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.71 55.0 4.05e-01 100.0% 32.4%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.70 54.0 3.21e-01 87.9% 18.0%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.68 56.0 4.14e-01 100.0% 96.8%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 55.0 3.42e-01 93.9% 18.9%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 48.0 3.24e-01 100.0% 18.7%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 3.91e-01 100.0% 35.5%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 3.81e-01 100.0% 33.0%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.64 48.0 3.06e-01 90.9% 44.3%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 48.0 3.74e-01 90.9% 36.6%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.63 46.0 3.29e-01 90.9% 42.9%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 48.0 2.80e-01 97.0% 54.5%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 46.0 3.72e-01 93.9% 58.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 3.14e-01 78.8% 25.2%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.37e-01 78.8% 36.6%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 47.0 2.93e-01 100.0% 82.0%
1cfyA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 44.0 3.08e-01 90.9% 25.6%
2kz0A01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.59 46.0 3.87e-01 100.0% 49.3%
4dddA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 44.0 2.98e-01 84.8% 47.1%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 3.50e-01 100.0% 35.8%
5tuuA00 1.20.140.80 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP 0.59 41.0 2.74e-01 78.8% 17.4%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 44.0 2.90e-01 87.9% 44.8%
1i6uA01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 47.0 3.88e-01 100.0% 48.5%
1wg1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 41.0 3.51e-01 100.0% 40.8%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 44.0 3.18e-01 97.0% 79.8%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.58 40.0 2.89e-01 84.8% 24.0%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 46.0 3.71e-01 100.0% 55.8%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 43.0 4.05e-01 100.0% 66.0%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 42.0 3.35e-01 93.9% 41.9%
4l2iA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 41.0 2.65e-01 90.9% 66.3%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 38.0 2.70e-01 72.7% 24.3%
2dchX01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 41.0 3.26e-01 100.0% 37.6%
4ljiB00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.55 40.0 2.77e-01 81.8% 82.4%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 41.0 2.96e-01 100.0% 63.1%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 42.0 3.19e-01 100.0% 37.6%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 2.95e-01 90.9% 64.4%
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.53 39.0 2.44e-01 100.0% 13.2%
3obaA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 40.0 2.44e-01 100.0% 86.9%
6za2B01 3.40.50.10390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Gingipain r; domain 1 0.53 39.0 2.66e-01 90.9% 86.5%
7b1cD01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 37.0 3.10e-01 100.0% 54.5%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.53 39.0 3.56e-01 93.9% 67.9%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 39.0 2.40e-01 93.9% 50.8%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 42.0 3.18e-01 100.0% 67.4%
4as2A02 1.20.1440.310 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 42.0 3.03e-01 100.0% 86.4%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 2.41e-01 100.0% 14.1%
1q16A09 3.30.30.200 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 40.0 3.77e-01 100.0% 97.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3574902 327.11.2.30 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DUF7636 0.82 68.0 4.93e-01 100.0% 34.3%
3247481 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.81 64.0 5.37e-01 100.0% 51.7%
3627058 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.79 71.0 4.27e-01 100.0% 16.5%
3576647 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.78 64.0 5.20e-01 100.0% 47.1%
4360595 304.156.1.1 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › FtsK_alpha 0.77 63.0 4.47e-01 100.0% 30.0%
3697768 872.4.1.0 a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like 0.72 54.0 5.22e-01 100.0% 73.3%
4507143 219.1.1.111 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.70 49.0 2.84e-01 75.8% 9.7%
3672127 2003.1.5.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran 0.70 53.0 3.52e-01 100.0% 19.4%
3315481 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.68 47.0 3.22e-01 72.7% 57.4%
3734895 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.68 50.0 3.84e-01 100.0% 32.4%
3739576 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.68 51.0 4.60e-01 100.0% 56.4%
3809917 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.68 50.0 4.57e-01 100.0% 58.2%
3789458 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.67 49.0 3.19e-01 100.0% 16.4%
3712993 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 53.0 4.30e-01 100.0% 44.0%
3289468 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 49.0 4.10e-01 100.0% 45.7%
4129336 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.64 49.0 3.37e-01 100.0% 21.3%
3746945 5051.1.1.1 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.64 45.0 2.46e-01 75.8% 5.5%
3958080 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 49.0 4.00e-01 100.0% 42.7%
3391335 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.63 46.0 3.50e-01 90.9% 31.1%
4021489 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.62 49.0 3.07e-01 97.0% 59.5%
162047 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.62 48.0 3.35e-01 97.0% 77.2%
3673110 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.61 44.0 4.41e-01 100.0% 82.5%
5078734 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.61 42.0 4.07e-01 90.9% 66.0%
None 0.61 45.0 2.64e-01 84.8% 22.5%
4624477 2003.1.1.38 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › THF_DHG_CYH_C 0.60 46.0 3.09e-01 90.9% 76.2%
3178990 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.59 47.0 2.63e-01 90.9% 24.4%
3965732 304.13.1.1 a+b two layers › Alpha-beta plaits › Hypothetical protein VC0424 › Hypothetical protein VC0424 › RraB 0.59 46.0 3.47e-01 100.0% 36.0%
3342304 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.13e-01 100.0% 49.0%
3597374 7510.1.1.0 a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.59 47.0 2.99e-01 93.9% 50.0%
3929773 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.59 44.0 2.68e-01 100.0% 30.8%
5046811 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.58 42.0 4.15e-01 100.0% 73.3%
3718119 2004.1.1.348 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B 0.58 46.0 3.09e-01 100.0% 27.1%
3787273 2485.1.1.20 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like 0.58 45.0 3.65e-01 97.0% 47.4%
5073781 219.1.1.153 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.57 44.0 2.86e-01 97.0% 87.7%
4861745 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.57 41.0 3.53e-01 81.8% 45.2%
5009797 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.56 41.0 2.88e-01 78.8% 25.0%
3385032 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.56 39.0 3.69e-01 78.8% 82.2%
4357374 320.2.1.1 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.56 44.0 3.73e-01 100.0% 92.3%
3916427 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 41.0 2.96e-01 97.0% 97.8%
3883169 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.54 37.0 2.28e-01 75.8% 35.6%
3780902 328.6.1.2 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC 0.54 38.0 2.58e-01 100.0% 15.8%
3222418 247.1.1.16 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 0.54 38.0 2.27e-01 100.0% 8.0%
4957284 219.1.1.153 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.54 37.0 2.54e-01 90.9% 49.1%
4490625 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.53 37.0 2.37e-01 78.8% 56.2%
3615178 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 2.77e-01 97.0% 96.2%
3739180 59.1.1.5 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 0.53 39.0 3.14e-01 93.9% 44.7%
3818705 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.52 45.0 3.31e-01 93.9% 70.0%
4126441 320.2.1.1 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.52 44.0 3.69e-01 100.0% 96.7%
4000297 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 37.0 2.26e-01 90.9% 31.8%
5060285 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.52 44.0 2.66e-01 97.0% 21.8%
3182948 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 36.0 3.15e-01 90.9% 41.3%
3704045 148.1.3.174 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RHSP 0.51 41.0 3.19e-01 100.0% 51.8%
3299745 207.1.1.185 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6 0.51 43.0 2.45e-01 100.0% 8.4%
3785811 109.4.1.1125 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TAF2_C 0.51 40.0 2.35e-01 100.0% 8.4%
3624701 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.51 35.0 3.09e-01 90.9% 41.7%
3928178 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.51 43.0 2.57e-01 100.0% 41.3%