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KR053196.1__AKJ72244.1__TPA4_79__00079

Bact-Vir

KR053196.1__AKJ72244.1__TPA4_79__00079

Identity

Accession:
KR053196 ↗
Kingdom:
phage

Quality

55.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 229-315
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.74 59.0 5.45e-01 100.0% 66.7%
1wthD01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 62.0 5.85e-01 100.0% 86.8%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.69 57.0 5.17e-01 100.0% 66.7%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 61.0 5.05e-01 100.0% 72.3%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 60.0 5.02e-01 100.0% 75.5%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 60.0 5.03e-01 100.0% 73.0%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 5.21e-01 100.0% 71.9%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 51.0 5.15e-01 100.0% 81.6%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 59.0 4.89e-01 100.0% 74.4%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 61.0 4.88e-01 100.0% 69.9%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 60.0 5.19e-01 100.0% 76.3%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 58.0 4.97e-01 100.0% 71.8%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.67 58.0 4.59e-01 94.3% 50.0%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 60.0 4.91e-01 100.0% 73.6%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 58.0 4.69e-01 100.0% 65.7%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 4.65e-01 100.0% 64.2%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 59.0 5.26e-01 100.0% 81.6%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 54.0 5.12e-01 100.0% 75.5%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 5.25e-01 100.0% 81.1%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 59.0 4.63e-01 100.0% 62.9%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 59.0 5.23e-01 100.0% 77.4%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 4.97e-01 100.0% 82.5%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 4.70e-01 100.0% 70.9%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 44.0 4.32e-01 88.5% 63.8%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 4.91e-01 100.0% 74.7%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 58.0 5.46e-01 100.0% 85.7%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 58.0 4.97e-01 100.0% 72.5%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 45.0 3.87e-01 92.0% 44.7%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 57.0 4.71e-01 100.0% 74.5%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 56.0 4.66e-01 100.0% 72.6%
1wg1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 42.0 4.51e-01 88.5% 80.3%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 56.0 4.43e-01 100.0% 64.9%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 57.0 5.04e-01 100.0% 84.4%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.64 38.0 3.67e-01 92.0% 52.1%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 56.0 4.88e-01 100.0% 76.5%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 56.0 4.90e-01 100.0% 85.9%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 57.0 4.45e-01 100.0% 63.9%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.63 47.0 4.92e-01 98.9% 87.3%
1qf6A02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.62 52.0 4.91e-01 100.0% 74.5%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 4.95e-01 100.0% 89.1%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 40.0 3.99e-01 86.2% 63.0%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 54.0 3.75e-01 100.0% 32.1%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.59 44.0 4.61e-01 100.0% 92.1%
3kewB02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.57 51.0 4.35e-01 100.0% 83.3%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 32.0 3.53e-01 89.7% 71.8%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.54 43.0 4.13e-01 90.8% 77.0%
4cbpB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 3.27e-01 83.9% 53.8%
3lvtA05 2.60.40.2220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 4.54e-01 100.0% 100.0%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.64e-01 77.0% 92.9%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.51 45.0 3.52e-01 100.0% 69.6%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.78e-01 81.6% 78.4%
5e7gA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.62e-01 83.9% 74.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978573 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.75 70.0 6.50e-01 100.0% 93.3%
4032514 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.74 61.0 4.57e-01 100.0% 37.6%
4344991 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.74 67.0 5.84e-01 100.0% 73.1%
3966280 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 68.0 6.63e-01 100.0% 91.6%
3967435 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.73 68.0 6.59e-01 100.0% 91.6%
3237729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 60.0 5.58e-01 100.0% 72.4%
1161129 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.72 62.0 5.69e-01 100.0% 72.3%
3966429 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.72 66.0 6.58e-01 100.0% 96.7%
3972305 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 66.0 6.57e-01 100.0% 96.7%
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 51.0 5.27e-01 86.2% 81.2%
2468519 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 64.0 6.07e-01 100.0% 96.1%
4333010 1.1.7.70 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.70 50.0 5.38e-01 80.5% 86.7%
4646862 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.70 59.0 5.45e-01 100.0% 72.7%
4118973 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.70 60.0 5.38e-01 100.0% 68.3%
5049721 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 60.0 5.36e-01 100.0% 67.2%
4889788 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 63.0 6.09e-01 100.0% 95.9%
3385776 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 60.0 5.22e-01 100.0% 75.6%
3973637 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 55.0 5.30e-01 90.8% 78.0%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 60.0 5.55e-01 100.0% 85.5%
4161414 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 49.0 4.76e-01 89.7% 69.0%
3744150 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.67 60.0 4.69e-01 100.0% 65.2%
3267872 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 55.0 4.82e-01 90.8% 69.2%
3286417 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.66 58.0 5.23e-01 100.0% 84.8%
3282756 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.66 58.0 5.07e-01 100.0% 85.2%
5048653 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.66 58.0 4.84e-01 100.0% 79.4%
4037095 1.1.5.36 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.66 58.0 4.75e-01 100.0% 69.7%
3278636 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.66 57.0 4.81e-01 100.0% 74.8%
4129418 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 59.0 5.08e-01 100.0% 74.8%
1883205 1.1.13.19 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.65 58.0 5.42e-01 100.0% 91.8%
3291351 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.65 57.0 4.74e-01 100.0% 72.5%
3660388 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 47.0 4.70e-01 87.4% 73.3%
3289725 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.65 57.0 5.06e-01 100.0% 82.3%
5065295 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.65 57.0 4.74e-01 100.0% 76.9%
5051220 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 46.0 4.60e-01 85.1% 72.2%
3280029 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.65 57.0 4.98e-01 100.0% 79.3%
3588729 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 57.0 5.57e-01 98.9% 100.0%
5018908 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.65 56.0 4.92e-01 100.0% 74.8%
4988336 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.64 56.0 4.91e-01 100.0% 74.8%
3279334 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.64 56.0 4.99e-01 100.0% 84.6%
3284440 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.64 57.0 4.90e-01 100.0% 81.2%
3975784 310.3.1.10 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HofO 0.63 45.0 4.64e-01 100.0% 77.6%
3691594 1.1.5.36 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.63 55.0 4.38e-01 100.0% 61.1%
4003057 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 49.0 4.54e-01 85.1% 68.5%
3955284 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 54.0 4.66e-01 100.0% 66.4%
1096951 1.1.5.13 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 0.62 54.0 3.91e-01 100.0% 38.4%
4033714 1.1.13.7 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.61 52.0 5.07e-01 94.3% 90.5%
3241831 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 47.0 4.36e-01 83.9% 66.4%
3569205 11.1.1.419 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3694 0.59 46.0 3.55e-01 83.9% 48.0%
5014046 11.1.1.949 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28476 0.59 42.0 3.98e-01 79.3% 61.9%
136963 309.1.2.1 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.57 51.0 4.31e-01 100.0% 83.6%
3799260 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.57 32.0 3.44e-01 97.7% 64.0%
3933059 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.53 38.0 3.54e-01 83.9% 57.4%
4962757 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 39.0 3.41e-01 79.3% 68.6%
3600305 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 39.0 3.34e-01 78.2% 92.1%
4319900 101.1.2.16 alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.51 45.0 3.88e-01 100.0% 84.3%
D2 medium residues 3-32
PDB
Domain cluster: representative
D3 medium residues 34-115
PDB