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KR053197.1__AKJ72275.1__GRU3_26__00026

Bact-Vir

KR053197.1__AKJ72275.1__GRU3_26__00026

Identity

Accession:
KR053197 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.74 51.0 5.04e-01 71.7% 69.8%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.65 43.0 3.32e-01 86.7% 30.1%
1ig8A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 48.0 3.75e-01 81.7% 49.3%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.63 44.0 3.81e-01 85.0% 45.9%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 3.88e-01 81.7% 80.2%
6ksrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 46.0 3.50e-01 81.7% 43.8%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 48.0 4.54e-01 85.0% 70.4%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 45.0 3.93e-01 78.3% 58.9%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 3.85e-01 86.7% 50.6%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.61 43.0 2.86e-01 75.0% 33.3%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 3.39e-01 78.3% 36.9%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 50.0 3.16e-01 95.0% 38.9%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 47.0 3.16e-01 85.0% 48.5%
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.60 45.0 3.27e-01 83.3% 83.4%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 3.89e-01 93.3% 52.1%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.59 43.0 3.44e-01 86.7% 40.2%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 45.0 3.98e-01 85.0% 56.8%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 47.0 3.33e-01 95.0% 34.1%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.60e-01 81.7% 79.6%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.85e-01 81.7% 81.4%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.83e-01 91.7% 35.4%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 42.0 4.13e-01 85.0% 75.0%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.72e-01 83.3% 80.9%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.90e-01 96.7% 36.0%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 39.0 3.32e-01 93.3% 44.6%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 36.0 2.88e-01 96.7% 32.8%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.42e-01 98.3% 40.9%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.25e-01 78.3% 44.5%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 45.0 3.60e-01 96.7% 87.9%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 2.47e-01 78.3% 30.6%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 2.73e-01 88.3% 45.7%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.72e-01 91.7% 80.6%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.43e-01 93.3% 48.5%
1y6kR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.41e-01 81.7% 80.6%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.52e-01 98.3% 92.5%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 38.0 2.95e-01 78.3% 84.7%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 40.0 4.03e-01 91.7% 83.9%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.44e-01 76.7% 95.0%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.52 38.0 3.61e-01 96.7% 66.7%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.90e-01 100.0% 40.2%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.13e-01 81.7% 81.4%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.61e-01 90.0% 64.4%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.11e-01 88.3% 54.7%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 37.0 2.53e-01 81.7% 20.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.53e-01 75.0% 72.3%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.26e-01 96.7% 49.5%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 43.0 3.30e-01 96.7% 65.3%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 40.0 3.53e-01 96.7% 60.2%
3hi7B02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.31e-01 96.7% 51.6%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 3.21e-01 90.0% 47.2%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.50 42.0 3.36e-01 93.3% 55.8%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3871241 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.76 57.0 3.73e-01 81.7% 29.2%
3763863 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.76 56.0 4.96e-01 78.3% 58.8%
4001239 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 53.0 4.57e-01 80.0% 47.4%
3321360 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.75 57.0 5.33e-01 81.7% 69.3%
5060852 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.69 48.0 5.35e-01 80.0% 97.8%
4980248 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.69 52.0 5.27e-01 83.3% 82.8%
3441723 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.67 53.0 3.38e-01 85.0% 38.9%
3383213 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.67 55.0 3.49e-01 91.7% 58.0%
4312097 295.1.1.15 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.66 47.0 3.39e-01 75.0% 82.9%
3482713 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 46.0 3.63e-01 78.3% 33.3%
4017529 220.1.1.112 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.66 48.0 3.61e-01 78.3% 31.3%
3345486 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.66 54.0 3.41e-01 91.7% 43.7%
3710328 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 56.0 4.54e-01 98.3% 84.2%
3805475 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 56.0 3.52e-01 96.7% 56.9%
3592741 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 52.0 4.69e-01 88.3% 65.9%
None 0.65 47.0 3.63e-01 78.3% 35.4%
5049357 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 53.0 4.34e-01 88.3% 64.5%
3615641 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 50.0 4.49e-01 85.0% 62.4%
3600720 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 56.0 4.86e-01 100.0% 89.5%
3227025 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 42.0 4.30e-01 78.3% 68.3%
3926886 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.64 50.0 3.82e-01 86.7% 42.9%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 43.0 3.81e-01 76.7% 47.8%
3501432 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 48.0 4.05e-01 86.7% 59.1%
3944443 2484.1.1.21 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.63 46.0 3.06e-01 80.0% 20.0%
3431347 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 50.0 3.34e-01 90.0% 47.5%
3593907 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 53.0 3.39e-01 95.0% 26.6%
3489154 5.1.5.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.62 47.0 2.82e-01 81.7% 19.0%
3291828 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.61 48.0 3.04e-01 88.3% 38.3%
3443786 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 47.0 4.44e-01 85.0% 70.7%
3991137 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.61 50.0 3.17e-01 91.7% 59.1%
4200272 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.61 49.0 4.39e-01 93.3% 80.0%
3298472 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 47.0 3.37e-01 83.3% 50.0%
5081878 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 48.0 3.01e-01 90.0% 33.3%
3421524 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 2.98e-01 91.7% 33.3%
3610705 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.60 47.0 2.85e-01 86.7% 26.8%
3426652 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 48.0 3.09e-01 91.7% 41.0%
3466381 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 46.0 3.82e-01 85.0% 59.1%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 46.0 3.86e-01 86.7% 48.6%
3457412 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 47.0 3.20e-01 95.0% 54.1%
7390 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.59 43.0 2.77e-01 86.7% 17.2%
3201455 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.59 45.0 3.40e-01 85.0% 66.5%
3575937 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 46.0 3.00e-01 91.7% 64.3%
3977405 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.58 42.0 3.62e-01 83.3% 47.0%
3853928 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.58 48.0 2.97e-01 95.0% 32.3%
3387142 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 3.02e-01 80.0% 27.9%
4213415 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 3.58e-01 81.7% 48.0%
3597697 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.57 48.0 3.40e-01 96.7% 42.5%
3937468 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.50e-01 80.0% 44.5%
5031715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.17e-01 75.0% 39.3%
4675215 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 41.0 3.54e-01 81.7% 46.7%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.56 39.0 3.22e-01 76.7% 83.8%
5050326 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 42.0 3.35e-01 80.0% 39.2%
4632674 223.1.1.171 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.56 35.0 2.92e-01 83.3% 33.9%
3636379 220.1.1.203 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_23 0.56 46.0 3.51e-01 96.7% 49.7%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 41.0 3.90e-01 83.3% 69.3%
3982482 79.1.1.9 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer 0.55 32.0 2.77e-01 78.3% 37.8%
4975626 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 44.0 3.40e-01 93.3% 58.7%
3221562 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.53 43.0 3.54e-01 90.0% 56.6%
3730739 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 44.0 3.49e-01 96.7% 64.7%
None 0.52 36.0 3.10e-01 71.7% 47.6%
4929818 861.1.1.0 a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.52 41.0 3.30e-01 93.3% 94.1%
4190134 4104.1.1.1 beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 0.52 43.0 3.83e-01 91.7% 77.6%
3689319 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.52 43.0 3.25e-01 98.3% 38.6%
4767909 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.52 38.0 2.50e-01 81.7% 32.3%
5081762 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 45.0 2.66e-01 96.7% 60.4%
4152389 206.1.1.17 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo 0.51 43.0 2.88e-01 95.0% 52.2%
3540845 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 44.0 3.41e-01 98.3% 65.7%