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KR053199.1__AKJ72293.1__GMA4_18__00018
Bact-VirKR053199.1__AKJ72293.1__GMA4_18__00018
Identity
- Accession:
- KR053199 ↗
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Cluster
View cluster (81 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 97-216
Domain cluster:
rep: KU613353.1__AMO43797.1__PBI_CATALINA_30__00029__D130-288
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gs9A02 | 3.55.50.40 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.74 | 50.0 | 5.65e-01 | 100.0% | 91.3% |
| 1wruA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.72 | 51.0 | 5.82e-01 | 100.0% | 98.9% |
| 2p5zX02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.70 | 52.0 | 5.71e-01 | 100.0% | 95.9% |
| 4uhvA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.70 | 49.0 | 5.51e-01 | 100.0% | 95.7% |
| 3ossD00 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.67 | 49.0 | 4.45e-01 | 95.0% | 57.3% |
| 2wzpR02 | 3.55.50.50 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 | 0.67 | 52.0 | 5.61e-01 | 98.3% | 100.0% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 39.0 | 2.79e-01 | 83.3% | 87.7% |
| 4g08A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 24.0 | 3.00e-01 | 72.5% | 72.9% |
| 3e10A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.50 | 37.0 | 3.36e-01 | 77.5% | 75.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967438 | 3070.1.1.2 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD | 0.72 | 51.0 | 5.73e-01 | 99.2% | 96.7% |
| 3972306 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.72 | 51.0 | 5.77e-01 | 100.0% | 97.8% |
| 3966573 | 3070.1.1.2 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD | 0.71 | 51.0 | 5.74e-01 | 100.0% | 97.8% |
| 3970829 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.71 | 50.0 | 5.71e-01 | 100.0% | 97.8% |
| 3968711 | 3070.1.1.2 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD | 0.69 | 50.0 | 5.64e-01 | 99.2% | 98.9% |
| 3943692 | 3070.1.1.2 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD | 0.69 | 52.0 | 5.73e-01 | 100.0% | 98.9% |
| 3948421 | 3070.1.1.2 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD | 0.68 | 46.0 | 5.32e-01 | 100.0% | 98.8% |
| 3933511 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 40.0 | 2.89e-01 | 83.3% | 76.4% |
| 4949672 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.50 | 37.0 | 3.33e-01 | 77.5% | 70.6% |
D2
medium
residues 1-93_306-386
Domain cluster:
rep: NC_077212__YP_010805990.1__QKV93-gp54__00054__D1-103_787-857
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cddA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.75 | 61.0 | 5.99e-01 | 84.5% | 95.1% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.74 | 60.0 | 6.00e-01 | 83.9% | 97.1% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.69 | 55.0 | 5.63e-01 | 82.8% | 98.2% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.67 | 54.0 | 5.48e-01 | 84.5% | 97.1% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.65 | 34.0 | 4.33e-01 | 70.1% | 84.6% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.63 | 33.0 | 3.95e-01 | 87.9% | 74.1% |
| 4uhvA01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.63 | 51.0 | 4.91e-01 | 84.5% | 96.9% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.62 | 35.0 | 4.42e-01 | 70.1% | 90.5% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.62 | 32.0 | 4.25e-01 | 71.3% | 93.5% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.61 | 33.0 | 4.07e-01 | 87.9% | 83.8% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 42.0 | 4.26e-01 | 79.9% | 93.0% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.54 | 35.0 | 4.13e-01 | 85.1% | 95.0% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 38.0 | 4.14e-01 | 78.7% | 86.4% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 4.08e-01 | 79.3% | 91.1% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.52 | 40.0 | 4.21e-01 | 90.8% | 87.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4147685 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.66 | 34.0 | 4.22e-01 | 89.7% | 78.2% |
| 4988102 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.63 | 40.0 | 4.96e-01 | 93.1% | 100.0% |
| 3497989 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 21.0 | 3.57e-01 | 70.7% | 86.7% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.62 | 38.0 | 4.46e-01 | 82.8% | 84.0% |
| 3290151 | 4090.1.1.0 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like | 0.62 | 35.0 | 4.11e-01 | 89.7% | 76.8% |
| 4157825 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.60 | 42.0 | 4.78e-01 | 92.0% | 94.6% |
| 3285197 | 4090.1.1.0 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like | 0.58 | 34.0 | 3.75e-01 | 87.9% | 71.9% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.57 | 37.0 | 4.45e-01 | 93.1% | 100.0% |
| 4985159 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.56 | 37.0 | 3.80e-01 | 78.7% | 68.5% |
| 3696371 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.55 | 45.0 | 4.11e-01 | 85.6% | 84.6% |
| 4096792 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.53 | 41.0 | 3.90e-01 | 79.9% | 82.4% |
| 3187986 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.53 | 30.0 | 3.80e-01 | 71.8% | 92.4% |
| 3265716 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 25.0 | 3.36e-01 | 70.1% | 88.9% |
D3
medium
residues 218-305
Domain cluster:
representative
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041374 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.77 | 53.0 | 5.94e-01 | 71.6% | 100.0% |
| 3573688 | 3071.1.1.6 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 | 0.76 | 55.0 | 5.76e-01 | 75.0% | 87.5% |
| 4957567 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.72 | 51.0 | 5.60e-01 | 72.7% | 100.0% |
| 3964699 | 3071.1.1.6 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 | 0.71 | 51.0 | 5.59e-01 | 73.9% | 100.0% |
| 4948700 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.57 | 39.0 | 2.64e-01 | 70.5% | 45.5% |
| 3404763 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.54 | 37.0 | 3.50e-01 | 71.6% | 83.5% |
| 4943886 | 230.1.1.0 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like | 0.51 | 35.0 | 2.98e-01 | 71.6% | 78.8% |
| 5011840 | 2003.1.2.40 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored | 0.51 | 42.0 | 2.81e-01 | 94.3% | 72.0% |