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KR053199.1__AKJ72314.1__GMA4_39__00039

Bact-Vir

KR053199.1__AKJ72314.1__GMA4_39__00039

Identity

Accession:
KR053199 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-105
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 6.01e-01 84.9% 83.3%
2w48B01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 59.0 6.00e-01 88.7% 86.5%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 56.0 5.26e-01 81.1% 66.7%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.23e-01 81.1% 70.5%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 4.97e-01 79.2% 64.6%
2m3vA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.69 54.0 3.67e-01 86.8% 24.9%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 4.52e-01 81.1% 53.8%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.69 48.0 4.26e-01 90.6% 51.3%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.04e-01 86.8% 76.2%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 56.0 3.54e-01 92.5% 18.8%
1lvaA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 5.21e-01 100.0% 90.0%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 51.0 4.98e-01 94.3% 83.3%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.97e-01 100.0% 79.1%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 51.0 3.78e-01 94.3% 66.7%
7tm7B01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 55.0 3.21e-01 100.0% 16.2%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 50.0 4.77e-01 92.5% 98.4%
2c4mA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.60 54.0 3.16e-01 100.0% 16.1%
1zk8A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 45.0 4.74e-01 88.7% 97.8%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.60 52.0 3.49e-01 98.1% 48.0%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 45.0 3.96e-01 84.9% 87.7%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 47.0 3.96e-01 94.3% 80.4%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 45.0 3.46e-01 88.7% 44.6%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.57 45.0 4.01e-01 90.6% 86.4%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 42.0 3.67e-01 81.1% 86.2%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.57 50.0 4.61e-01 100.0% 75.7%
3ehmA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.55 43.0 3.46e-01 90.6% 100.0%
5a4uF02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 46.0 3.61e-01 100.0% 66.1%
3ttvA02 1.20.1370.20 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain 0.55 44.0 3.69e-01 100.0% 49.0%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.54 42.0 4.08e-01 90.6% 80.3%
3gl5A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 2.80e-01 86.8% 35.5%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.52 41.0 2.94e-01 92.5% 37.1%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.51 39.0 3.52e-01 83.0% 77.0%
1mjtB01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.51 42.0 3.21e-01 92.5% 87.6%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.51 43.0 3.12e-01 100.0% 35.6%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.50 40.0 3.30e-01 100.0% 64.5%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4068904 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 67.0 7.22e-01 79.2% 95.5%
4977146 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 64.0 5.05e-01 84.9% 47.0%
4971221 101.1.6.42 alpha arrays › HTH › HTH › TrpR › HTH_24 0.79 61.0 4.76e-01 86.8% 40.0%
3926525 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.77 55.0 6.22e-01 88.7% 100.0%
3959876 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 55.0 4.37e-01 81.1% 40.0%
3283500 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.76 60.0 6.21e-01 84.9% 90.0%
4541333 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 56.0 5.83e-01 79.2% 84.0%
3984938 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.75 58.0 5.09e-01 88.7% 56.2%
3795916 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 58.0 6.16e-01 86.8% 97.8%
1594930 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.75 58.0 5.99e-01 86.8% 90.0%
4928270 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.74 53.0 5.65e-01 83.0% 91.1%
3971860 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 56.0 5.80e-01 84.9% 86.0%
4928203 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 51.0 3.40e-01 81.1% 20.1%
4863786 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.73 58.0 5.80e-01 86.8% 83.6%
3971395 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 54.0 4.82e-01 81.1% 56.0%
4244028 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.73 57.0 5.44e-01 84.9% 73.3%
3973360 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 55.0 4.96e-01 81.1% 60.0%
3953011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 57.0 5.64e-01 83.0% 83.6%
3971149 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 54.0 4.66e-01 81.1% 52.5%
4007596 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.72 54.0 5.58e-01 79.2% 84.0%
5002651 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 61.0 5.06e-01 94.3% 80.0%
4237551 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 55.0 4.48e-01 81.1% 45.3%
3283374 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 52.0 4.30e-01 79.2% 43.2%
3282225 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 55.0 4.75e-01 81.1% 53.8%
4626289 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.72 55.0 5.26e-01 92.5% 70.8%
3972638 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 53.0 5.00e-01 81.1% 64.6%
4947436 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.51e-01 84.9% 80.0%
3284011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 54.0 4.94e-01 81.1% 62.9%
3959868 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 4.80e-01 81.1% 57.3%
3969080 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.71 53.0 5.30e-01 90.6% 80.0%
5064701 101.1.2.879 alpha arrays › HTH › HTH › winged helix domain › DUF134 0.71 55.0 4.79e-01 84.9% 55.0%
5051712 101.1.4.90 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_23 0.71 52.0 5.22e-01 86.8% 76.4%
3743337 3184.1.1.1 alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.71 57.0 5.36e-01 88.7% 72.3%
4456068 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 56.0 4.49e-01 84.9% 87.0%
2330636 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 54.0 5.41e-01 81.1% 81.1%
3959929 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 54.0 4.63e-01 81.1% 53.8%
4997411 101.1.3.33 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 0.70 54.0 4.65e-01 84.9% 53.8%
4303963 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 53.0 4.70e-01 81.1% 57.3%
3959252 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 52.0 5.04e-01 81.1% 70.0%
5067053 101.1.2.879 alpha arrays › HTH › HTH › winged helix domain › DUF134 0.70 55.0 4.96e-01 84.9% 62.9%
3284469 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 53.0 4.70e-01 81.1% 57.3%
3591004 3355.1.1.8 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_H_antiporter 0.70 62.0 3.62e-01 100.0% 89.8%
3951829 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.70 53.0 4.50e-01 81.1% 50.6%
3860590 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.70 56.0 5.80e-01 88.7% 100.0%
3589532 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 52.0 4.27e-01 81.1% 45.9%
3969641 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.70 55.0 4.79e-01 84.9% 75.0%
4944862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 54.0 4.69e-01 84.9% 55.0%
3590753 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 52.0 5.35e-01 88.7% 86.0%
3786618 101.1.1.201 alpha arrays › HTH › HTH › Three-helical HTH › Bot1p 0.69 53.0 4.04e-01 88.7% 35.5%
4534822 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.69 54.0 4.76e-01 84.9% 58.7%
3973709 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 55.0 4.39e-01 86.8% 88.6%
4980021 101.1.3.33 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 0.69 52.0 4.81e-01 84.9% 62.9%
4520564 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.68 58.0 5.04e-01 94.3% 97.5%
3284051 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.67 50.0 4.71e-01 81.1% 66.2%
3980686 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.67 53.0 5.42e-01 90.6% 96.0%
4471327 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.66 54.0 5.37e-01 98.1% 100.0%
5053505 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.66 51.0 5.22e-01 92.5% 90.0%
4596898 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.66 54.0 4.84e-01 100.0% 63.7%
4945932 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 4.41e-01 94.3% 50.5%
3394498 558.1.1.1 alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › LisH 0.66 47.0 4.17e-01 86.8% 53.3%
4937291 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.65 49.0 5.14e-01 88.7% 97.8%
3968335 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.65 51.0 4.98e-01 90.6% 80.0%
4683276 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.65 50.0 4.18e-01 86.8% 47.4%
4263447 3801.1.1.4 extended segments › ParE2-associated antitoxin 2 (PaaA2) › ParE2-associated antitoxin 2 (PaaA2) › ParE2-associated antitoxin 2 (PaaA2) › UPF0175 0.65 48.0 5.09e-01 88.7% 97.8%
3743465 3184.1.1.1 alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.65 56.0 5.27e-01 98.1% 83.1%
4966195 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 53.0 4.83e-01 90.6% 81.4%
4449179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 4.83e-01 90.6% 76.7%
3357244 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.61 47.0 3.76e-01 83.0% 45.7%
4501735 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 48.0 4.40e-01 94.3% 64.0%
4654073 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.61 48.0 4.44e-01 92.5% 70.7%
4989022 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.61 46.0 4.80e-01 90.6% 100.0%
5028152 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 49.0 4.66e-01 94.3% 78.5%
5064868 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.59 47.0 4.17e-01 98.1% 57.8%
3846034 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.51 41.0 3.20e-01 96.2% 69.6%