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KR053199.1__AKJ72316.1__GMA4_41__00041

Bact-Vir

KR053199.1__AKJ72316.1__GMA4_41__00041

Identity

Accession:
KR053199 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordonia_phage_GMA4

TaxID: 1647471

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-150
PDB
Domain cluster: rep: OQ938576.1__WIC88950.1__SEA_SHAGRAT_82__00082__D12-133
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 42.0 4.44e-01 100.0% 78.3%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 4.59e-01 100.0% 92.9%
1eovA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 4.00e-01 100.0% 67.2%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 44.0 4.46e-01 100.0% 87.8%
1jbiA00 2.170.130.20 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › LCCL-like domain 0.54 37.0 4.03e-01 100.0% 84.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4201477 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 43.0 4.44e-01 100.0% 79.1%
4551342 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 32.0 3.66e-01 76.3% 75.3%
4321663 4004.1.1.10 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 0.56 33.0 2.80e-01 72.9% 34.9%
4015154 101.1.8.10 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.54 41.0 3.51e-01 82.2% 74.0%
3707381 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.91e-01 100.0% 72.8%
3707760 2.1.1.225 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.52 44.0 4.43e-01 100.0% 89.2%
4933611 2.1.1.190 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Nre_N 0.52 43.0 4.21e-01 100.0% 82.3%
3716787 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 37.0 3.88e-01 100.0% 82.7%
4025160 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.50 43.0 4.26e-01 100.0% 88.0%